The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution

Ottelia acuminate var. crispa is an endangered aquatic herb with extremely narrow distribution. In this study, we assembled the chloroplast genome of this species based on the second-generation high-throughput sequencing. The genome is 157,783 bp in length with a typical quadripartite structure incl...

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Autores principales: Tu, Chaoyong, Lin, Hao, Wang, Qiang, Wu, Lijun, Yang, Yulian, Zou, Lijuan, Wu, Qinggui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995839/
https://www.ncbi.nlm.nih.gov/pubmed/33796742
http://dx.doi.org/10.1080/23802359.2021.1899860
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author Tu, Chaoyong
Lin, Hao
Wang, Qiang
Wu, Lijun
Yang, Yulian
Zou, Lijuan
Wu, Qinggui
author_facet Tu, Chaoyong
Lin, Hao
Wang, Qiang
Wu, Lijun
Yang, Yulian
Zou, Lijuan
Wu, Qinggui
author_sort Tu, Chaoyong
collection PubMed
description Ottelia acuminate var. crispa is an endangered aquatic herb with extremely narrow distribution. In this study, we assembled the chloroplast genome of this species based on the second-generation high-throughput sequencing. The genome is 157,783 bp in length with a typical quadripartite structure including a large single-copy region (LSC) of 88,294 bp, a small single-copy region (SSC) of 49,379 bp, and a pair of inverted repeats (IRs) of 10,055 bp each. A total of 128 genes were annotated, including 83 protein-coding genes (PCG), 37 tRNA genes, and 8 rRNA genes. The phylogenetic tree shows that O. acuminate var. crispa has a close relationship with the genus Elodea. The chloroplast genome presented here provides a valuable resource to conserve this endangered species.
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spelling pubmed-79958392021-03-31 The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution Tu, Chaoyong Lin, Hao Wang, Qiang Wu, Lijun Yang, Yulian Zou, Lijuan Wu, Qinggui Mitochondrial DNA B Resour Mitogenome Announcement Ottelia acuminate var. crispa is an endangered aquatic herb with extremely narrow distribution. In this study, we assembled the chloroplast genome of this species based on the second-generation high-throughput sequencing. The genome is 157,783 bp in length with a typical quadripartite structure including a large single-copy region (LSC) of 88,294 bp, a small single-copy region (SSC) of 49,379 bp, and a pair of inverted repeats (IRs) of 10,055 bp each. A total of 128 genes were annotated, including 83 protein-coding genes (PCG), 37 tRNA genes, and 8 rRNA genes. The phylogenetic tree shows that O. acuminate var. crispa has a close relationship with the genus Elodea. The chloroplast genome presented here provides a valuable resource to conserve this endangered species. Taylor & Francis 2021-03-22 /pmc/articles/PMC7995839/ /pubmed/33796742 http://dx.doi.org/10.1080/23802359.2021.1899860 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Tu, Chaoyong
Lin, Hao
Wang, Qiang
Wu, Lijun
Yang, Yulian
Zou, Lijuan
Wu, Qinggui
The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
title The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
title_full The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
title_fullStr The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
title_full_unstemmed The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
title_short The complete chloroplast genome of Ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
title_sort complete chloroplast genome of ottelia acuminate var. crispa, an endangered aquatic herb with extremely narrow distribution
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995839/
https://www.ncbi.nlm.nih.gov/pubmed/33796742
http://dx.doi.org/10.1080/23802359.2021.1899860
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