Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott

Homalomena occulta (Lour.) Schott (H. occulta) is a traditional Chinese medicine. However, the chloroplast genome has not been reported. Here, we assembled and analyzed the complete chloroplast (CP) genome of H. occulta. We found that the CP genome of H. occulta is 165,398 bp in length and contains...

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Autores principales: Zhang, Ke, Wu, Kongju, Lu, Suxiang, Zhang, Junfeng, Ma, Xiaodong, Wang, Yanzi, Huang, Li, Wang, Xiangting, Xia, Xichao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995840/
https://www.ncbi.nlm.nih.gov/pubmed/33796723
http://dx.doi.org/10.1080/23802359.2021.1895690
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author Zhang, Ke
Wu, Kongju
Lu, Suxiang
Zhang, Junfeng
Ma, Xiaodong
Wang, Yanzi
Huang, Li
Wang, Xiangting
Xia, Xichao
author_facet Zhang, Ke
Wu, Kongju
Lu, Suxiang
Zhang, Junfeng
Ma, Xiaodong
Wang, Yanzi
Huang, Li
Wang, Xiangting
Xia, Xichao
author_sort Zhang, Ke
collection PubMed
description Homalomena occulta (Lour.) Schott (H. occulta) is a traditional Chinese medicine. However, the chloroplast genome has not been reported. Here, we assembled and analyzed the complete chloroplast (CP) genome of H. occulta. We found that the CP genome of H. occulta is 165,398 bp in length and contains a large single-copy (LSC) region of 92,861 bp, a small single-copy (SSC) region of 20,943 bp and an inverted repeat (IR) region of 25,797 bp. The genome contains 130 genes including 85 protein-coding genes, 8 rRNA and 37 tRNA. Phylogenetic analysis indicated that H. occulta is close to Philodendron lanceolatum. This study provides useful data for the development of molecular markers and identification of H. occulta.
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spelling pubmed-79958402021-03-31 Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott Zhang, Ke Wu, Kongju Lu, Suxiang Zhang, Junfeng Ma, Xiaodong Wang, Yanzi Huang, Li Wang, Xiangting Xia, Xichao Mitochondrial DNA B Resour Mitogenome Announcement Homalomena occulta (Lour.) Schott (H. occulta) is a traditional Chinese medicine. However, the chloroplast genome has not been reported. Here, we assembled and analyzed the complete chloroplast (CP) genome of H. occulta. We found that the CP genome of H. occulta is 165,398 bp in length and contains a large single-copy (LSC) region of 92,861 bp, a small single-copy (SSC) region of 20,943 bp and an inverted repeat (IR) region of 25,797 bp. The genome contains 130 genes including 85 protein-coding genes, 8 rRNA and 37 tRNA. Phylogenetic analysis indicated that H. occulta is close to Philodendron lanceolatum. This study provides useful data for the development of molecular markers and identification of H. occulta. Taylor & Francis 2021-03-18 /pmc/articles/PMC7995840/ /pubmed/33796723 http://dx.doi.org/10.1080/23802359.2021.1895690 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Ke
Wu, Kongju
Lu, Suxiang
Zhang, Junfeng
Ma, Xiaodong
Wang, Yanzi
Huang, Li
Wang, Xiangting
Xia, Xichao
Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott
title Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott
title_full Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott
title_fullStr Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott
title_full_unstemmed Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott
title_short Characterization of the complete chloroplast genome of Homalomena occulta (Lour.) Schott
title_sort characterization of the complete chloroplast genome of homalomena occulta (lour.) schott
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995840/
https://www.ncbi.nlm.nih.gov/pubmed/33796723
http://dx.doi.org/10.1080/23802359.2021.1895690
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