The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea

The first complete chloroplast genome sequence of Jeju Island endemic diploid dandelion, Taraxacum hallaisanense, is reported in this study. The plastome size is 151,554 bp in total length, with one large single copy (LSC; 84,066 bp), one small single copy (SSC; 18,524 bp), and two inverted repeat (...

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Autores principales: Lee, Woong, Kim, Young-Soo, Kim, Seung-Chul, Pak, Jae-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995859/
https://www.ncbi.nlm.nih.gov/pubmed/33796730
http://dx.doi.org/10.1080/23802359.2021.1899072
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author Lee, Woong
Kim, Young-Soo
Kim, Seung-Chul
Pak, Jae-Hong
author_facet Lee, Woong
Kim, Young-Soo
Kim, Seung-Chul
Pak, Jae-Hong
author_sort Lee, Woong
collection PubMed
description The first complete chloroplast genome sequence of Jeju Island endemic diploid dandelion, Taraxacum hallaisanense, is reported in this study. The plastome size is 151,554 bp in total length, with one large single copy (LSC; 84,066 bp), one small single copy (SSC; 18,524 bp), and two inverted repeat (IR) regions (IR(a) and IR(b), each with 24,482 bp). The overall GC content is 37.7% and the genome contained 129 genes, including 84 protein-coding with 2 pseudogenes (ycf1 and accD), 37 transfer RNA, and 8 ribosomal RNA genes. Phylogenetic analysis of 19 representative plastomes of the Asteraceae suggests that Taraxacum is monophyletic with strong bootstrap support and also that T. hallaisanense is closely related to T. mongolicum.
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spelling pubmed-79958592021-03-31 The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea Lee, Woong Kim, Young-Soo Kim, Seung-Chul Pak, Jae-Hong Mitochondrial DNA B Resour Mitogenome Announcement The first complete chloroplast genome sequence of Jeju Island endemic diploid dandelion, Taraxacum hallaisanense, is reported in this study. The plastome size is 151,554 bp in total length, with one large single copy (LSC; 84,066 bp), one small single copy (SSC; 18,524 bp), and two inverted repeat (IR) regions (IR(a) and IR(b), each with 24,482 bp). The overall GC content is 37.7% and the genome contained 129 genes, including 84 protein-coding with 2 pseudogenes (ycf1 and accD), 37 transfer RNA, and 8 ribosomal RNA genes. Phylogenetic analysis of 19 representative plastomes of the Asteraceae suggests that Taraxacum is monophyletic with strong bootstrap support and also that T. hallaisanense is closely related to T. mongolicum. Taylor & Francis 2021-03-18 /pmc/articles/PMC7995859/ /pubmed/33796730 http://dx.doi.org/10.1080/23802359.2021.1899072 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lee, Woong
Kim, Young-Soo
Kim, Seung-Chul
Pak, Jae-Hong
The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea
title The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea
title_full The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea
title_fullStr The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea
title_full_unstemmed The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea
title_short The complete chloroplast genome sequence of a narrow alpine endemic, Taraxacum hallaisanense (Asteraceae), on Jeju Island, Korea
title_sort complete chloroplast genome sequence of a narrow alpine endemic, taraxacum hallaisanense (asteraceae), on jeju island, korea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995859/
https://www.ncbi.nlm.nih.gov/pubmed/33796730
http://dx.doi.org/10.1080/23802359.2021.1899072
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