Cargando…
The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae)
In present study, we report the complete chloroplast genome of Nicotiana debneyi, a species endemic to eastern coast of Australia. The total genome size of N.debneyi is 156,073 bp in length, containing a large single-copy region of 86,672 bp, a small single-copy region of 18,581 bp, and two inverted...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995905/ https://www.ncbi.nlm.nih.gov/pubmed/33796732 http://dx.doi.org/10.1080/23802359.2021.1899074 |
_version_ | 1783670005790932992 |
---|---|
author | Zeng, Jianmin Huang, Changjun Liu, Yong Yuan, Cheng Yu, Haiqin Song, Biqing |
author_facet | Zeng, Jianmin Huang, Changjun Liu, Yong Yuan, Cheng Yu, Haiqin Song, Biqing |
author_sort | Zeng, Jianmin |
collection | PubMed |
description | In present study, we report the complete chloroplast genome of Nicotiana debneyi, a species endemic to eastern coast of Australia. The total genome size of N.debneyi is 156,073 bp in length, containing a large single-copy region of 86,672 bp, a small single-copy region of 18,581 bp, and two inverted repeat regions of 25,410 bp. The all GC content of N.debneyi chloroplast genome is 38.4%. It encodes a total of 129 unique genes, including 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes, of which seven tRNA, four rRNA and seven protein-coding genes are duplicated in the IR. Sixteen genes contain a single intron, and only two genes have two introns. Phylogenetic analysis results strongly supported that N.debneyi was closely related to Nicotiana sylvestris and Nicotiana tabacum. |
format | Online Article Text |
id | pubmed-7995905 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79959052021-03-31 The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) Zeng, Jianmin Huang, Changjun Liu, Yong Yuan, Cheng Yu, Haiqin Song, Biqing Mitochondrial DNA B Resour Mitogenome Announcement In present study, we report the complete chloroplast genome of Nicotiana debneyi, a species endemic to eastern coast of Australia. The total genome size of N.debneyi is 156,073 bp in length, containing a large single-copy region of 86,672 bp, a small single-copy region of 18,581 bp, and two inverted repeat regions of 25,410 bp. The all GC content of N.debneyi chloroplast genome is 38.4%. It encodes a total of 129 unique genes, including 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes, of which seven tRNA, four rRNA and seven protein-coding genes are duplicated in the IR. Sixteen genes contain a single intron, and only two genes have two introns. Phylogenetic analysis results strongly supported that N.debneyi was closely related to Nicotiana sylvestris and Nicotiana tabacum. Taylor & Francis 2021-03-19 /pmc/articles/PMC7995905/ /pubmed/33796732 http://dx.doi.org/10.1080/23802359.2021.1899074 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zeng, Jianmin Huang, Changjun Liu, Yong Yuan, Cheng Yu, Haiqin Song, Biqing The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) |
title | The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) |
title_full | The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) |
title_fullStr | The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) |
title_short | The complete chloroplast genome sequence of Nicotiana debneyi (Solanaceae) |
title_sort | complete chloroplast genome sequence of nicotiana debneyi (solanaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7995905/ https://www.ncbi.nlm.nih.gov/pubmed/33796732 http://dx.doi.org/10.1080/23802359.2021.1899074 |
work_keys_str_mv | AT zengjianmin thecompletechloroplastgenomesequenceofnicotianadebneyisolanaceae AT huangchangjun thecompletechloroplastgenomesequenceofnicotianadebneyisolanaceae AT liuyong thecompletechloroplastgenomesequenceofnicotianadebneyisolanaceae AT yuancheng thecompletechloroplastgenomesequenceofnicotianadebneyisolanaceae AT yuhaiqin thecompletechloroplastgenomesequenceofnicotianadebneyisolanaceae AT songbiqing thecompletechloroplastgenomesequenceofnicotianadebneyisolanaceae AT zengjianmin completechloroplastgenomesequenceofnicotianadebneyisolanaceae AT huangchangjun completechloroplastgenomesequenceofnicotianadebneyisolanaceae AT liuyong completechloroplastgenomesequenceofnicotianadebneyisolanaceae AT yuancheng completechloroplastgenomesequenceofnicotianadebneyisolanaceae AT yuhaiqin completechloroplastgenomesequenceofnicotianadebneyisolanaceae AT songbiqing completechloroplastgenomesequenceofnicotianadebneyisolanaceae |