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Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma

BACKGROUND: It is well accepted that both competitive endogenous RNAs (ceRNAs) and immune microenvironment exert crucial roles in the tumor prognosis. The present study aimed to find prognostic ceRNAs and immune cells in lung adenocarcinoma (LUAD). MATERIALS AND METHODS: More specifically, we explor...

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Autores principales: Zhang, Miaomiao, Zheng, Peiyan, Wang, Yuan, Sun, Baoqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996073/
https://www.ncbi.nlm.nih.gov/pubmed/33828913
http://dx.doi.org/10.7717/peerj.11029
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author Zhang, Miaomiao
Zheng, Peiyan
Wang, Yuan
Sun, Baoqing
author_facet Zhang, Miaomiao
Zheng, Peiyan
Wang, Yuan
Sun, Baoqing
author_sort Zhang, Miaomiao
collection PubMed
description BACKGROUND: It is well accepted that both competitive endogenous RNAs (ceRNAs) and immune microenvironment exert crucial roles in the tumor prognosis. The present study aimed to find prognostic ceRNAs and immune cells in lung adenocarcinoma (LUAD). MATERIALS AND METHODS: More specifically, we explored the associations of crucial ceRNAs with the immune microenvironment. The Cancer Genome Atlas (TCGA) database was employed to obtain expression profiles of ceRNAs and clinical data. CIBERSORT was utilized to quantify the proportion of 22 immune cells in LUAD. RESULTS: We constructed two cox regression models based on crucial ceRNAs and immune cells to predict prognosis in LUAD. Subsequently, seven ceRNAs and seven immune cells were involved in prognostic models. We validated both predicted models via an independent cohort GSE72094. Interestingly, both predicted models proved that the longer patients were smoking, the higher risk scores would be obtained. We further investigated the relationships between seven genes and immune/stromal scores via the ESTIMATE algorithm. The results indicated that CDC14A and H1F0 expression were significantly related to stromal scores/immune scores in LUAD. Moreover, based on the result of the ceRNA model, single-sample gene set enrichment analysis (ssGSEA) suggested that differences in immune status were evident between high- and low-risk groups.
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spelling pubmed-79960732021-04-06 Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma Zhang, Miaomiao Zheng, Peiyan Wang, Yuan Sun, Baoqing PeerJ Bioinformatics BACKGROUND: It is well accepted that both competitive endogenous RNAs (ceRNAs) and immune microenvironment exert crucial roles in the tumor prognosis. The present study aimed to find prognostic ceRNAs and immune cells in lung adenocarcinoma (LUAD). MATERIALS AND METHODS: More specifically, we explored the associations of crucial ceRNAs with the immune microenvironment. The Cancer Genome Atlas (TCGA) database was employed to obtain expression profiles of ceRNAs and clinical data. CIBERSORT was utilized to quantify the proportion of 22 immune cells in LUAD. RESULTS: We constructed two cox regression models based on crucial ceRNAs and immune cells to predict prognosis in LUAD. Subsequently, seven ceRNAs and seven immune cells were involved in prognostic models. We validated both predicted models via an independent cohort GSE72094. Interestingly, both predicted models proved that the longer patients were smoking, the higher risk scores would be obtained. We further investigated the relationships between seven genes and immune/stromal scores via the ESTIMATE algorithm. The results indicated that CDC14A and H1F0 expression were significantly related to stromal scores/immune scores in LUAD. Moreover, based on the result of the ceRNA model, single-sample gene set enrichment analysis (ssGSEA) suggested that differences in immune status were evident between high- and low-risk groups. PeerJ Inc. 2021-03-23 /pmc/articles/PMC7996073/ /pubmed/33828913 http://dx.doi.org/10.7717/peerj.11029 Text en ©2021 Zhang et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Zhang, Miaomiao
Zheng, Peiyan
Wang, Yuan
Sun, Baoqing
Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
title Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
title_full Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
title_fullStr Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
title_full_unstemmed Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
title_short Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
title_sort two predicted models based on cernas and immune cells in lung adenocarcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996073/
https://www.ncbi.nlm.nih.gov/pubmed/33828913
http://dx.doi.org/10.7717/peerj.11029
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AT zhengpeiyan twopredictedmodelsbasedoncernasandimmunecellsinlungadenocarcinoma
AT wangyuan twopredictedmodelsbasedoncernasandimmunecellsinlungadenocarcinoma
AT sunbaoqing twopredictedmodelsbasedoncernasandimmunecellsinlungadenocarcinoma