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Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma
BACKGROUND: It is well accepted that both competitive endogenous RNAs (ceRNAs) and immune microenvironment exert crucial roles in the tumor prognosis. The present study aimed to find prognostic ceRNAs and immune cells in lung adenocarcinoma (LUAD). MATERIALS AND METHODS: More specifically, we explor...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996073/ https://www.ncbi.nlm.nih.gov/pubmed/33828913 http://dx.doi.org/10.7717/peerj.11029 |
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author | Zhang, Miaomiao Zheng, Peiyan Wang, Yuan Sun, Baoqing |
author_facet | Zhang, Miaomiao Zheng, Peiyan Wang, Yuan Sun, Baoqing |
author_sort | Zhang, Miaomiao |
collection | PubMed |
description | BACKGROUND: It is well accepted that both competitive endogenous RNAs (ceRNAs) and immune microenvironment exert crucial roles in the tumor prognosis. The present study aimed to find prognostic ceRNAs and immune cells in lung adenocarcinoma (LUAD). MATERIALS AND METHODS: More specifically, we explored the associations of crucial ceRNAs with the immune microenvironment. The Cancer Genome Atlas (TCGA) database was employed to obtain expression profiles of ceRNAs and clinical data. CIBERSORT was utilized to quantify the proportion of 22 immune cells in LUAD. RESULTS: We constructed two cox regression models based on crucial ceRNAs and immune cells to predict prognosis in LUAD. Subsequently, seven ceRNAs and seven immune cells were involved in prognostic models. We validated both predicted models via an independent cohort GSE72094. Interestingly, both predicted models proved that the longer patients were smoking, the higher risk scores would be obtained. We further investigated the relationships between seven genes and immune/stromal scores via the ESTIMATE algorithm. The results indicated that CDC14A and H1F0 expression were significantly related to stromal scores/immune scores in LUAD. Moreover, based on the result of the ceRNA model, single-sample gene set enrichment analysis (ssGSEA) suggested that differences in immune status were evident between high- and low-risk groups. |
format | Online Article Text |
id | pubmed-7996073 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79960732021-04-06 Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma Zhang, Miaomiao Zheng, Peiyan Wang, Yuan Sun, Baoqing PeerJ Bioinformatics BACKGROUND: It is well accepted that both competitive endogenous RNAs (ceRNAs) and immune microenvironment exert crucial roles in the tumor prognosis. The present study aimed to find prognostic ceRNAs and immune cells in lung adenocarcinoma (LUAD). MATERIALS AND METHODS: More specifically, we explored the associations of crucial ceRNAs with the immune microenvironment. The Cancer Genome Atlas (TCGA) database was employed to obtain expression profiles of ceRNAs and clinical data. CIBERSORT was utilized to quantify the proportion of 22 immune cells in LUAD. RESULTS: We constructed two cox regression models based on crucial ceRNAs and immune cells to predict prognosis in LUAD. Subsequently, seven ceRNAs and seven immune cells were involved in prognostic models. We validated both predicted models via an independent cohort GSE72094. Interestingly, both predicted models proved that the longer patients were smoking, the higher risk scores would be obtained. We further investigated the relationships between seven genes and immune/stromal scores via the ESTIMATE algorithm. The results indicated that CDC14A and H1F0 expression were significantly related to stromal scores/immune scores in LUAD. Moreover, based on the result of the ceRNA model, single-sample gene set enrichment analysis (ssGSEA) suggested that differences in immune status were evident between high- and low-risk groups. PeerJ Inc. 2021-03-23 /pmc/articles/PMC7996073/ /pubmed/33828913 http://dx.doi.org/10.7717/peerj.11029 Text en ©2021 Zhang et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Zhang, Miaomiao Zheng, Peiyan Wang, Yuan Sun, Baoqing Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma |
title | Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma |
title_full | Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma |
title_fullStr | Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma |
title_full_unstemmed | Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma |
title_short | Two predicted models based on ceRNAs and immune cells in lung adenocarcinoma |
title_sort | two predicted models based on cernas and immune cells in lung adenocarcinoma |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996073/ https://www.ncbi.nlm.nih.gov/pubmed/33828913 http://dx.doi.org/10.7717/peerj.11029 |
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