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The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
Ocimum gratissimum L. is an important medicinal species with several therapeutic applications. It is used in traditional medicine as a single drug and in formulations. We generated the complete chloroplast genome sequence of O. gratissimum by using Illumina paired-end sequencing data. The O. gratiss...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996081/ https://www.ncbi.nlm.nih.gov/pubmed/33796694 http://dx.doi.org/10.1080/23802359.2021.1889413 |
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author | Balaji, Raju Ravichandiran, Kumar , Tanuja Parani, Madasamy |
author_facet | Balaji, Raju Ravichandiran, Kumar , Tanuja Parani, Madasamy |
author_sort | Balaji, Raju |
collection | PubMed |
description | Ocimum gratissimum L. is an important medicinal species with several therapeutic applications. It is used in traditional medicine as a single drug and in formulations. We generated the complete chloroplast genome sequence of O. gratissimum by using Illumina paired-end sequencing data. The O. gratissimum chloroplast genome is 152,469 bp in length, containing a large single copy (LSC) region of 83,614 bp and a small single copy region (SSC) of 17,607 bp, separated by a pair of inverted repeats (IRs) of 25,624 bp. The genome contains 138 unique genes, including 85 protein-coding, 45 tRNA, and eight rRNA genes. Among them, six genes have one intron each, and two genes contain two introns. The overall GC content of the chloroplast genome is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.6%, 31.7%, and 43.2%, respectively. Phylogenetic analysis with the complete chloroplast genomes of other related species revealed that O. gratissimum is fully resolved in a clade with other Ocimum species classified to the family Lamiaceae. |
format | Online Article Text |
id | pubmed-7996081 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79960812021-03-31 The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae Balaji, Raju Ravichandiran, Kumar , Tanuja Parani, Madasamy Mitochondrial DNA B Resour Mitogenome Announcement Ocimum gratissimum L. is an important medicinal species with several therapeutic applications. It is used in traditional medicine as a single drug and in formulations. We generated the complete chloroplast genome sequence of O. gratissimum by using Illumina paired-end sequencing data. The O. gratissimum chloroplast genome is 152,469 bp in length, containing a large single copy (LSC) region of 83,614 bp and a small single copy region (SSC) of 17,607 bp, separated by a pair of inverted repeats (IRs) of 25,624 bp. The genome contains 138 unique genes, including 85 protein-coding, 45 tRNA, and eight rRNA genes. Among them, six genes have one intron each, and two genes contain two introns. The overall GC content of the chloroplast genome is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.6%, 31.7%, and 43.2%, respectively. Phylogenetic analysis with the complete chloroplast genomes of other related species revealed that O. gratissimum is fully resolved in a clade with other Ocimum species classified to the family Lamiaceae. Taylor & Francis 2021-03-17 /pmc/articles/PMC7996081/ /pubmed/33796694 http://dx.doi.org/10.1080/23802359.2021.1889413 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Balaji, Raju Ravichandiran, Kumar , Tanuja Parani, Madasamy The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae |
title | The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae |
title_full | The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae |
title_fullStr | The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae |
title_full_unstemmed | The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae |
title_short | The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae |
title_sort | complete chloroplast genome of ocimum gratissimum from india – a medicinal plant in the lamiaceae |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996081/ https://www.ncbi.nlm.nih.gov/pubmed/33796694 http://dx.doi.org/10.1080/23802359.2021.1889413 |
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