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The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae

Ocimum gratissimum L. is an important medicinal species with several therapeutic applications. It is used in traditional medicine as a single drug and in formulations. We generated the complete chloroplast genome sequence of O. gratissimum by using Illumina paired-end sequencing data. The O. gratiss...

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Autores principales: Balaji, Raju, Ravichandiran, Kumar, , Tanuja, Parani, Madasamy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996081/
https://www.ncbi.nlm.nih.gov/pubmed/33796694
http://dx.doi.org/10.1080/23802359.2021.1889413
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author Balaji, Raju
Ravichandiran, Kumar
, Tanuja
Parani, Madasamy
author_facet Balaji, Raju
Ravichandiran, Kumar
, Tanuja
Parani, Madasamy
author_sort Balaji, Raju
collection PubMed
description Ocimum gratissimum L. is an important medicinal species with several therapeutic applications. It is used in traditional medicine as a single drug and in formulations. We generated the complete chloroplast genome sequence of O. gratissimum by using Illumina paired-end sequencing data. The O. gratissimum chloroplast genome is 152,469 bp in length, containing a large single copy (LSC) region of 83,614 bp and a small single copy region (SSC) of 17,607 bp, separated by a pair of inverted repeats (IRs) of 25,624 bp. The genome contains 138 unique genes, including 85 protein-coding, 45 tRNA, and eight rRNA genes. Among them, six genes have one intron each, and two genes contain two introns. The overall GC content of the chloroplast genome is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.6%, 31.7%, and 43.2%, respectively. Phylogenetic analysis with the complete chloroplast genomes of other related species revealed that O. gratissimum is fully resolved in a clade with other Ocimum species classified to the family Lamiaceae.
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spelling pubmed-79960812021-03-31 The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae Balaji, Raju Ravichandiran, Kumar , Tanuja Parani, Madasamy Mitochondrial DNA B Resour Mitogenome Announcement Ocimum gratissimum L. is an important medicinal species with several therapeutic applications. It is used in traditional medicine as a single drug and in formulations. We generated the complete chloroplast genome sequence of O. gratissimum by using Illumina paired-end sequencing data. The O. gratissimum chloroplast genome is 152,469 bp in length, containing a large single copy (LSC) region of 83,614 bp and a small single copy region (SSC) of 17,607 bp, separated by a pair of inverted repeats (IRs) of 25,624 bp. The genome contains 138 unique genes, including 85 protein-coding, 45 tRNA, and eight rRNA genes. Among them, six genes have one intron each, and two genes contain two introns. The overall GC content of the chloroplast genome is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.6%, 31.7%, and 43.2%, respectively. Phylogenetic analysis with the complete chloroplast genomes of other related species revealed that O. gratissimum is fully resolved in a clade with other Ocimum species classified to the family Lamiaceae. Taylor & Francis 2021-03-17 /pmc/articles/PMC7996081/ /pubmed/33796694 http://dx.doi.org/10.1080/23802359.2021.1889413 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Balaji, Raju
Ravichandiran, Kumar
, Tanuja
Parani, Madasamy
The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
title The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
title_full The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
title_fullStr The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
title_full_unstemmed The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
title_short The complete chloroplast genome of Ocimum gratissimum from India – a medicinal plant in the Lamiaceae
title_sort complete chloroplast genome of ocimum gratissimum from india – a medicinal plant in the lamiaceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7996081/
https://www.ncbi.nlm.nih.gov/pubmed/33796694
http://dx.doi.org/10.1080/23802359.2021.1889413
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