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From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences

Decades of reductionist approaches in biology have achieved spectacular progress, but the proliferation of subdisciplines, each with its own technical and social practices regarding data, impedes the growth of the multidisciplinary and interdisciplinary approaches now needed to address pressing soci...

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Detalles Bibliográficos
Autores principales: Thessen, Anne E., Bogdan, Paul, Patterson, David J., Casey, Theresa M., Hinojo-Hinojo, César, de Lange, Orlando, Haendel, Melissa A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997011/
https://www.ncbi.nlm.nih.gov/pubmed/33770077
http://dx.doi.org/10.1371/journal.pbio.3001129
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author Thessen, Anne E.
Bogdan, Paul
Patterson, David J.
Casey, Theresa M.
Hinojo-Hinojo, César
de Lange, Orlando
Haendel, Melissa A.
author_facet Thessen, Anne E.
Bogdan, Paul
Patterson, David J.
Casey, Theresa M.
Hinojo-Hinojo, César
de Lange, Orlando
Haendel, Melissa A.
author_sort Thessen, Anne E.
collection PubMed
description Decades of reductionist approaches in biology have achieved spectacular progress, but the proliferation of subdisciplines, each with its own technical and social practices regarding data, impedes the growth of the multidisciplinary and interdisciplinary approaches now needed to address pressing societal challenges. Data integration is key to a reintegrated biology able to address global issues such as climate change, biodiversity loss, and sustainable ecosystem management. We identify major challenges to data integration and present a vision for a “Data as a Service”-oriented architecture to promote reuse of data for discovery. The proposed architecture includes standards development, new tools and services, and strategies for career-development and sustainability.
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spelling pubmed-79970112021-04-06 From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences Thessen, Anne E. Bogdan, Paul Patterson, David J. Casey, Theresa M. Hinojo-Hinojo, César de Lange, Orlando Haendel, Melissa A. PLoS Biol Essay Decades of reductionist approaches in biology have achieved spectacular progress, but the proliferation of subdisciplines, each with its own technical and social practices regarding data, impedes the growth of the multidisciplinary and interdisciplinary approaches now needed to address pressing societal challenges. Data integration is key to a reintegrated biology able to address global issues such as climate change, biodiversity loss, and sustainable ecosystem management. We identify major challenges to data integration and present a vision for a “Data as a Service”-oriented architecture to promote reuse of data for discovery. The proposed architecture includes standards development, new tools and services, and strategies for career-development and sustainability. Public Library of Science 2021-03-26 /pmc/articles/PMC7997011/ /pubmed/33770077 http://dx.doi.org/10.1371/journal.pbio.3001129 Text en © 2021 Thessen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Essay
Thessen, Anne E.
Bogdan, Paul
Patterson, David J.
Casey, Theresa M.
Hinojo-Hinojo, César
de Lange, Orlando
Haendel, Melissa A.
From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
title From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
title_full From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
title_fullStr From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
title_full_unstemmed From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
title_short From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences
title_sort from reductionism to reintegration: solving society’s most pressing problems requires building bridges between data types across the life sciences
topic Essay
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997011/
https://www.ncbi.nlm.nih.gov/pubmed/33770077
http://dx.doi.org/10.1371/journal.pbio.3001129
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