Cargando…

Temporal Dynamic Methods for Bulk RNA-Seq Time Series Data

Dynamic studies in time course experimental designs and clinical approaches have been widely used by the biomedical community. These applications are particularly relevant in stimuli-response models under environmental conditions, characterization of gradient biological processes in developmental bi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Oh, Vera-Khlara S., Li, Robert W.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2021
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997275/ https://www.ncbi.nlm.nih.gov/pubmed/33673721 http://dx.doi.org/10.3390/genes12030352

Ejemplares similares

Temporal dynamics in meta longitudinal RNA-Seq data
por: Oh, Sunghee, et al.
Publicado: (2019)

Large-Scale Meta-Longitudinal Microbiome Data with a Known Batch Factor
por: Oh, Vera-Khlara S., et al.
Publicado: (2022)

An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data
por: Sun, Xifang, et al.
Publicado: (2019)

Effective methods for bulk RNA-seq deconvolution using scnRNA-seq transcriptomes
por: Cobos, Francisco Avila, et al.
Publicado: (2023)

SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
por: Peng, Tao, et al.
Publicado: (2019)

A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq
por: Ye, Wenbin, et al.
Publicado: (2023)

Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data
por: You, Yue, et al.
Publicado: (2023)

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data
por: Calgaro, Matteo, et al.
Publicado: (2020)

Gene Mapping via Bulked Segregant RNA-Seq (BSR-Seq)
por: Liu, Sanzhen, et al.
Publicado: (2012)

Prime-seq, efficient and powerful bulk RNA sequencing
por: Janjic, Aleksandar, et al.
Publicado: (2022)

PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data
por: Jonnakuti, Venkata Soumith, et al.
Publicado: (2023)

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation
por: Äijö, Tarmo, et al.
Publicado: (2014)

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis
por: Dimitrov, Daniel, et al.
Publicado: (2020)

Exploring PANoptosis in breast cancer based on scRNA-seq and bulk-seq
por: He, Puxing, et al.
Publicado: (2023)

Analysis of damage-associated molecular patterns in amyotrophic lateral sclerosis based on ScRNA-seq and bulk RNA-seq data
por: Shi, Yue, et al.
Publicado: (2023)

Integrating Single-Cell RNA-Seq and Bulk RNA-Seq Data to Explore the Key Role of Fatty Acid Metabolism in Breast Cancer
por: Chen, Yongxing, et al.
Publicado: (2023)

A new dynamic correlation algorithm reveals novel functional aspects in single cell and bulk RNA-seq data
por: Yu, Tianwei
Publicado: (2018)

High-Order Correlation Integration for Single-Cell or Bulk RNA-seq Data Analysis
por: Tang, Hui, et al.
Publicado: (2019)

SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data
por: Assefa, Alemu Takele, et al.
Publicado: (2020)

Differential transcript usage analysis of bulk and single-cell RNA-seq data with DTUrtle
por: Tekath, Tobias, et al.
Publicado: (2021)

Characterizing cancer metabolism from bulk and single-cell RNA-seq data using METAFlux
por: Huang, Yuefan, et al.
Publicado: (2023)

Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data
por: You, Yue, et al.
Publicado: (2023)

Integration of scRNA-Seq and Bulk RNA-Seq Reveals Molecular Characterization of the Immune Microenvironment in Acute Pancreatitis
por: Fang, Zhen, et al.
Publicado: (2022)

TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
por: Song, Li, et al.
Publicado: (2021)

Clustering-independent estimation of cell abundances in bulk tissues using single-cell RNA-seq data
por: Aubin, Rachael G., et al.
Publicado: (2023)

Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods
por: Costa-Silva, Juliana, et al.
Publicado: (2022)

Searchlight: automated bulk RNA-seq exploration and visualisation using dynamically generated R scripts
por: Cole, John J., et al.
Publicado: (2021)

A computational method for cell type-specific expression quantitative trait loci mapping using bulk RNA-seq data
por: Little, Paul, et al.
Publicado: (2023)

RNA-SSNV: A Reliable Somatic Single Nucleotide Variant Identification Framework for Bulk RNA-Seq Data
por: Long, Qihan, et al.
Publicado: (2022)

Single‐cell RNA‐seq and bulk RNA‐seq explore the prognostic value of exhausted T cells in hepatocellular carcinoma
por: Tang, Xiaolong, et al.
Publicado: (2023)

Quantifying Selection with Pool-Seq Time Series Data
por: Taus, Thomas, et al.
Publicado: (2017)

De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution
por: Liao, Jie, et al.
Publicado: (2022)

Time Series Expression Analyses Using RNA-seq: A Statistical Approach
por: Oh, Sunghee, et al.
Publicado: (2013)

FunPat: function-based pattern analysis on RNA-seq time series data
por: Sanavia, Tiziana, et al.
Publicado: (2015)

psupertime: supervised pseudotime analysis for time-series single-cell RNA-seq data
por: Macnair, Will, et al.
Publicado: (2022)

Deep learning using bulk RNA-seq data expands cell landscape identification in tumor microenvironment
por: Wang, Xin, et al.
Publicado: (2022)

Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data
por: Lee, Che Yu, et al.
Publicado: (2022)

Dynamic Model for RNA-seq Data Analysis
por: Li, Lerong, et al.
Publicado: (2015)

Integration of scRNA-Seq and bulk RNA-Seq uncover perturbed immune cell types and pathways of Kawasaki disease
por: Cao, Naixin, et al.
Publicado: (2023)

ScRNA-seq and bulk RNA-seq reveal the characteristics of ferroptosis and establish a risk signature in cholangiocarcinoma
por: Yao, Wenchao, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_kgvoacg1q4664ckp9ts195t8t1