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Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules

[Image: see text] An efficient method is described for generating a fragmented, permutationally invariant polynomial basis to fit electronic energies and, if available, gradients for large molecules. The method presented rests on the fragmentation of a large molecule into any number of fragments whi...

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Autores principales: Conte, Riccardo, Qu, Chen, Houston, Paul L., Bowman, Joel M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997398/
https://www.ncbi.nlm.nih.gov/pubmed/32212729
http://dx.doi.org/10.1021/acs.jctc.0c00001
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author Conte, Riccardo
Qu, Chen
Houston, Paul L.
Bowman, Joel M.
author_facet Conte, Riccardo
Qu, Chen
Houston, Paul L.
Bowman, Joel M.
author_sort Conte, Riccardo
collection PubMed
description [Image: see text] An efficient method is described for generating a fragmented, permutationally invariant polynomial basis to fit electronic energies and, if available, gradients for large molecules. The method presented rests on the fragmentation of a large molecule into any number of fragments while maintaining the permutational invariance and uniqueness of the polynomials. The new approach improves on a previous one reported by Qu and Bowman by avoiding repetition of polynomials in the fitting basis set and speeding up gradient evaluations while keeping the accuracy of the PES. The method is demonstrated for CH(3)–NH–CO–CH(3) (N-methylacetamide) and NH(2)–CH(2)–COOH (glycine).
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spelling pubmed-79973982021-03-29 Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules Conte, Riccardo Qu, Chen Houston, Paul L. Bowman, Joel M. J Chem Theory Comput [Image: see text] An efficient method is described for generating a fragmented, permutationally invariant polynomial basis to fit electronic energies and, if available, gradients for large molecules. The method presented rests on the fragmentation of a large molecule into any number of fragments while maintaining the permutational invariance and uniqueness of the polynomials. The new approach improves on a previous one reported by Qu and Bowman by avoiding repetition of polynomials in the fitting basis set and speeding up gradient evaluations while keeping the accuracy of the PES. The method is demonstrated for CH(3)–NH–CO–CH(3) (N-methylacetamide) and NH(2)–CH(2)–COOH (glycine). American Chemical Society 2020-03-26 2020-05-12 /pmc/articles/PMC7997398/ /pubmed/32212729 http://dx.doi.org/10.1021/acs.jctc.0c00001 Text en Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Conte, Riccardo
Qu, Chen
Houston, Paul L.
Bowman, Joel M.
Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
title Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
title_full Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
title_fullStr Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
title_full_unstemmed Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
title_short Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
title_sort efficient generation of permutationally invariant potential energy surfaces for large molecules
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997398/
https://www.ncbi.nlm.nih.gov/pubmed/32212729
http://dx.doi.org/10.1021/acs.jctc.0c00001
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