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Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules
[Image: see text] An efficient method is described for generating a fragmented, permutationally invariant polynomial basis to fit electronic energies and, if available, gradients for large molecules. The method presented rests on the fragmentation of a large molecule into any number of fragments whi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997398/ https://www.ncbi.nlm.nih.gov/pubmed/32212729 http://dx.doi.org/10.1021/acs.jctc.0c00001 |
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author | Conte, Riccardo Qu, Chen Houston, Paul L. Bowman, Joel M. |
author_facet | Conte, Riccardo Qu, Chen Houston, Paul L. Bowman, Joel M. |
author_sort | Conte, Riccardo |
collection | PubMed |
description | [Image: see text] An efficient method is described for generating a fragmented, permutationally invariant polynomial basis to fit electronic energies and, if available, gradients for large molecules. The method presented rests on the fragmentation of a large molecule into any number of fragments while maintaining the permutational invariance and uniqueness of the polynomials. The new approach improves on a previous one reported by Qu and Bowman by avoiding repetition of polynomials in the fitting basis set and speeding up gradient evaluations while keeping the accuracy of the PES. The method is demonstrated for CH(3)–NH–CO–CH(3) (N-methylacetamide) and NH(2)–CH(2)–COOH (glycine). |
format | Online Article Text |
id | pubmed-7997398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-79973982021-03-29 Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules Conte, Riccardo Qu, Chen Houston, Paul L. Bowman, Joel M. J Chem Theory Comput [Image: see text] An efficient method is described for generating a fragmented, permutationally invariant polynomial basis to fit electronic energies and, if available, gradients for large molecules. The method presented rests on the fragmentation of a large molecule into any number of fragments while maintaining the permutational invariance and uniqueness of the polynomials. The new approach improves on a previous one reported by Qu and Bowman by avoiding repetition of polynomials in the fitting basis set and speeding up gradient evaluations while keeping the accuracy of the PES. The method is demonstrated for CH(3)–NH–CO–CH(3) (N-methylacetamide) and NH(2)–CH(2)–COOH (glycine). American Chemical Society 2020-03-26 2020-05-12 /pmc/articles/PMC7997398/ /pubmed/32212729 http://dx.doi.org/10.1021/acs.jctc.0c00001 Text en Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Conte, Riccardo Qu, Chen Houston, Paul L. Bowman, Joel M. Efficient Generation of Permutationally Invariant Potential Energy Surfaces for Large Molecules |
title | Efficient Generation of Permutationally Invariant
Potential Energy Surfaces for Large Molecules |
title_full | Efficient Generation of Permutationally Invariant
Potential Energy Surfaces for Large Molecules |
title_fullStr | Efficient Generation of Permutationally Invariant
Potential Energy Surfaces for Large Molecules |
title_full_unstemmed | Efficient Generation of Permutationally Invariant
Potential Energy Surfaces for Large Molecules |
title_short | Efficient Generation of Permutationally Invariant
Potential Energy Surfaces for Large Molecules |
title_sort | efficient generation of permutationally invariant
potential energy surfaces for large molecules |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7997398/ https://www.ncbi.nlm.nih.gov/pubmed/32212729 http://dx.doi.org/10.1021/acs.jctc.0c00001 |
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