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Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring

Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we report deep learning models that can accurately p...

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Autores principales: Liao, Qiuyue, Zhang, Qi, Feng, Xue, Huang, Haibo, Xu, Haohao, Tian, Baoyuan, Liu, Jihao, Yu, Qihui, Guo, Na, Liu, Qun, Huang, Bo, Ma, Ding, Ai, Jihui, Xu, Shugong, Li, Kezhen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7998018/
https://www.ncbi.nlm.nih.gov/pubmed/33772211
http://dx.doi.org/10.1038/s42003-021-01937-1
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author Liao, Qiuyue
Zhang, Qi
Feng, Xue
Huang, Haibo
Xu, Haohao
Tian, Baoyuan
Liu, Jihao
Yu, Qihui
Guo, Na
Liu, Qun
Huang, Bo
Ma, Ding
Ai, Jihui
Xu, Shugong
Li, Kezhen
author_facet Liao, Qiuyue
Zhang, Qi
Feng, Xue
Huang, Haibo
Xu, Haohao
Tian, Baoyuan
Liu, Jihao
Yu, Qihui
Guo, Na
Liu, Qun
Huang, Bo
Ma, Ding
Ai, Jihui
Xu, Shugong
Li, Kezhen
author_sort Liao, Qiuyue
collection PubMed
description Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we report deep learning models that can accurately predict blastocyst formation and usable blastocysts using TLM videos of the embryo’s first three days. The DenseNet201 network, focal loss, long short-term memory (LSTM) network and gradient boosting classifier were mainly employed, and video preparation algorithms, spatial stream and temporal stream models were developed into ensemble prediction models called STEM and STEM(+). STEM exhibited 78.2% accuracy and 0.82 AUC in predicting blastocyst formation, and STEM(+) achieved 71.9% accuracy and 0.79 AUC in predicting usable blastocysts. We believe the models are beneficial for blastocyst formation prediction and embryo selection in clinical practice, and our modeling methods will provide valuable information for analyzing medical videos with continuous appearance variation.
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spelling pubmed-79980182021-04-16 Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring Liao, Qiuyue Zhang, Qi Feng, Xue Huang, Haibo Xu, Haohao Tian, Baoyuan Liu, Jihao Yu, Qihui Guo, Na Liu, Qun Huang, Bo Ma, Ding Ai, Jihui Xu, Shugong Li, Kezhen Commun Biol Article Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we report deep learning models that can accurately predict blastocyst formation and usable blastocysts using TLM videos of the embryo’s first three days. The DenseNet201 network, focal loss, long short-term memory (LSTM) network and gradient boosting classifier were mainly employed, and video preparation algorithms, spatial stream and temporal stream models were developed into ensemble prediction models called STEM and STEM(+). STEM exhibited 78.2% accuracy and 0.82 AUC in predicting blastocyst formation, and STEM(+) achieved 71.9% accuracy and 0.79 AUC in predicting usable blastocysts. We believe the models are beneficial for blastocyst formation prediction and embryo selection in clinical practice, and our modeling methods will provide valuable information for analyzing medical videos with continuous appearance variation. Nature Publishing Group UK 2021-03-26 /pmc/articles/PMC7998018/ /pubmed/33772211 http://dx.doi.org/10.1038/s42003-021-01937-1 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liao, Qiuyue
Zhang, Qi
Feng, Xue
Huang, Haibo
Xu, Haohao
Tian, Baoyuan
Liu, Jihao
Yu, Qihui
Guo, Na
Liu, Qun
Huang, Bo
Ma, Ding
Ai, Jihui
Xu, Shugong
Li, Kezhen
Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
title Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
title_full Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
title_fullStr Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
title_full_unstemmed Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
title_short Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
title_sort development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7998018/
https://www.ncbi.nlm.nih.gov/pubmed/33772211
http://dx.doi.org/10.1038/s42003-021-01937-1
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