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Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring
Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we report deep learning models that can accurately p...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7998018/ https://www.ncbi.nlm.nih.gov/pubmed/33772211 http://dx.doi.org/10.1038/s42003-021-01937-1 |
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author | Liao, Qiuyue Zhang, Qi Feng, Xue Huang, Haibo Xu, Haohao Tian, Baoyuan Liu, Jihao Yu, Qihui Guo, Na Liu, Qun Huang, Bo Ma, Ding Ai, Jihui Xu, Shugong Li, Kezhen |
author_facet | Liao, Qiuyue Zhang, Qi Feng, Xue Huang, Haibo Xu, Haohao Tian, Baoyuan Liu, Jihao Yu, Qihui Guo, Na Liu, Qun Huang, Bo Ma, Ding Ai, Jihui Xu, Shugong Li, Kezhen |
author_sort | Liao, Qiuyue |
collection | PubMed |
description | Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we report deep learning models that can accurately predict blastocyst formation and usable blastocysts using TLM videos of the embryo’s first three days. The DenseNet201 network, focal loss, long short-term memory (LSTM) network and gradient boosting classifier were mainly employed, and video preparation algorithms, spatial stream and temporal stream models were developed into ensemble prediction models called STEM and STEM(+). STEM exhibited 78.2% accuracy and 0.82 AUC in predicting blastocyst formation, and STEM(+) achieved 71.9% accuracy and 0.79 AUC in predicting usable blastocysts. We believe the models are beneficial for blastocyst formation prediction and embryo selection in clinical practice, and our modeling methods will provide valuable information for analyzing medical videos with continuous appearance variation. |
format | Online Article Text |
id | pubmed-7998018 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79980182021-04-16 Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring Liao, Qiuyue Zhang, Qi Feng, Xue Huang, Haibo Xu, Haohao Tian, Baoyuan Liu, Jihao Yu, Qihui Guo, Na Liu, Qun Huang, Bo Ma, Ding Ai, Jihui Xu, Shugong Li, Kezhen Commun Biol Article Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we report deep learning models that can accurately predict blastocyst formation and usable blastocysts using TLM videos of the embryo’s first three days. The DenseNet201 network, focal loss, long short-term memory (LSTM) network and gradient boosting classifier were mainly employed, and video preparation algorithms, spatial stream and temporal stream models were developed into ensemble prediction models called STEM and STEM(+). STEM exhibited 78.2% accuracy and 0.82 AUC in predicting blastocyst formation, and STEM(+) achieved 71.9% accuracy and 0.79 AUC in predicting usable blastocysts. We believe the models are beneficial for blastocyst formation prediction and embryo selection in clinical practice, and our modeling methods will provide valuable information for analyzing medical videos with continuous appearance variation. Nature Publishing Group UK 2021-03-26 /pmc/articles/PMC7998018/ /pubmed/33772211 http://dx.doi.org/10.1038/s42003-021-01937-1 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Liao, Qiuyue Zhang, Qi Feng, Xue Huang, Haibo Xu, Haohao Tian, Baoyuan Liu, Jihao Yu, Qihui Guo, Na Liu, Qun Huang, Bo Ma, Ding Ai, Jihui Xu, Shugong Li, Kezhen Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
title | Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
title_full | Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
title_fullStr | Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
title_full_unstemmed | Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
title_short | Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
title_sort | development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7998018/ https://www.ncbi.nlm.nih.gov/pubmed/33772211 http://dx.doi.org/10.1038/s42003-021-01937-1 |
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