Cargando…

Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules

In this manuscript, we report the application of graphene oxide (GO) in the preparation of cryo-electron microscopy (cryo-EM) and transmission electron microscopy (TEM) grids. We treated GO with water and organic solvents, such as, methanol, ethanol and isopropanol separately to isolate significantl...

Descripción completa

Detalles Bibliográficos
Autores principales: Kumar, Anil, Sengupta, Nayanika, Dutta, Somnath
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7999706/
https://www.ncbi.nlm.nih.gov/pubmed/33808009
http://dx.doi.org/10.3390/nano11030643
_version_ 1783670843043217408
author Kumar, Anil
Sengupta, Nayanika
Dutta, Somnath
author_facet Kumar, Anil
Sengupta, Nayanika
Dutta, Somnath
author_sort Kumar, Anil
collection PubMed
description In this manuscript, we report the application of graphene oxide (GO) in the preparation of cryo-electron microscopy (cryo-EM) and transmission electron microscopy (TEM) grids. We treated GO with water and organic solvents, such as, methanol, ethanol and isopropanol separately to isolate significantly large GO monolayer flake to fabricate the grids for cryo-EM and TEM study. We implemented a simplified approach to isolate flakes of GO monolayer for constructing the TEM grids, independent of expensive heavy equipment (Langmuir–Blodgett trough, glow-discharge system, carbon-evaporator or plasma-cleaner or peristaltic pumps). We employed confocal microscopy, SEM and TEM to characterize the flake size, stability and transparency of the GO monolayer and atomic force microscopy (AFM) to probe the depth of GO coated grids. Additionally, GO grids are visualized at cryogenic condition for suitability of GO monolayer for cryo-EM study. In addition, GO-Met-H(2)O grids reduce the effect of preferred orientation of biological macromolecules within the amorphous ice. The power-spectrum and contrast-transfer-function unequivocally suggest that GO-Met-H(2)O fabricated holey grids have excellent potential for application in high-resolution structural characterization of biomolecules. Furthermore, only 200 movies and ~8000 70S ribosome particles are selected on GO-coated grids for cryo-EM reconstruction to achieve high-resolution structure.
format Online
Article
Text
id pubmed-7999706
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-79997062021-03-28 Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules Kumar, Anil Sengupta, Nayanika Dutta, Somnath Nanomaterials (Basel) Article In this manuscript, we report the application of graphene oxide (GO) in the preparation of cryo-electron microscopy (cryo-EM) and transmission electron microscopy (TEM) grids. We treated GO with water and organic solvents, such as, methanol, ethanol and isopropanol separately to isolate significantly large GO monolayer flake to fabricate the grids for cryo-EM and TEM study. We implemented a simplified approach to isolate flakes of GO monolayer for constructing the TEM grids, independent of expensive heavy equipment (Langmuir–Blodgett trough, glow-discharge system, carbon-evaporator or plasma-cleaner or peristaltic pumps). We employed confocal microscopy, SEM and TEM to characterize the flake size, stability and transparency of the GO monolayer and atomic force microscopy (AFM) to probe the depth of GO coated grids. Additionally, GO grids are visualized at cryogenic condition for suitability of GO monolayer for cryo-EM study. In addition, GO-Met-H(2)O grids reduce the effect of preferred orientation of biological macromolecules within the amorphous ice. The power-spectrum and contrast-transfer-function unequivocally suggest that GO-Met-H(2)O fabricated holey grids have excellent potential for application in high-resolution structural characterization of biomolecules. Furthermore, only 200 movies and ~8000 70S ribosome particles are selected on GO-coated grids for cryo-EM reconstruction to achieve high-resolution structure. MDPI 2021-03-05 /pmc/articles/PMC7999706/ /pubmed/33808009 http://dx.doi.org/10.3390/nano11030643 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Kumar, Anil
Sengupta, Nayanika
Dutta, Somnath
Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules
title Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules
title_full Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules
title_fullStr Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules
title_full_unstemmed Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules
title_short Simplified Approach for Preparing Graphene Oxide TEM Grids for Stained and Vitrified Biomolecules
title_sort simplified approach for preparing graphene oxide tem grids for stained and vitrified biomolecules
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7999706/
https://www.ncbi.nlm.nih.gov/pubmed/33808009
http://dx.doi.org/10.3390/nano11030643
work_keys_str_mv AT kumaranil simplifiedapproachforpreparinggrapheneoxidetemgridsforstainedandvitrifiedbiomolecules
AT senguptanayanika simplifiedapproachforpreparinggrapheneoxidetemgridsforstainedandvitrifiedbiomolecules
AT duttasomnath simplifiedapproachforpreparinggrapheneoxidetemgridsforstainedandvitrifiedbiomolecules