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Huntingtin: A Protein with a Peculiar Solvent Accessible Surface

Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns,...

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Detalles Bibliográficos
Autores principales: Babbi, Giulia, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8001614/
https://www.ncbi.nlm.nih.gov/pubmed/33809039
http://dx.doi.org/10.3390/ijms22062878
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author Babbi, Giulia
Savojardo, Castrense
Martelli, Pier Luigi
Casadio, Rita
author_facet Babbi, Giulia
Savojardo, Castrense
Martelli, Pier Luigi
Casadio, Rita
author_sort Babbi, Giulia
collection PubMed
description Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns, with the prevalence of the latter ones. We then evaluated the probability of exposed residues to be in contact with other proteins, discovering that they tend to cluster in specific regions of the protein. We then found that the remaining portions of the protein surface can contain calcium-binding sites that we propose here as putative mediators for the protein to interact with membranes. Our findings are justified in relation to the present knowledge of huntingtin functional annotation.
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spelling pubmed-80016142021-03-28 Huntingtin: A Protein with a Peculiar Solvent Accessible Surface Babbi, Giulia Savojardo, Castrense Martelli, Pier Luigi Casadio, Rita Int J Mol Sci Article Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns, with the prevalence of the latter ones. We then evaluated the probability of exposed residues to be in contact with other proteins, discovering that they tend to cluster in specific regions of the protein. We then found that the remaining portions of the protein surface can contain calcium-binding sites that we propose here as putative mediators for the protein to interact with membranes. Our findings are justified in relation to the present knowledge of huntingtin functional annotation. MDPI 2021-03-12 /pmc/articles/PMC8001614/ /pubmed/33809039 http://dx.doi.org/10.3390/ijms22062878 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Babbi, Giulia
Savojardo, Castrense
Martelli, Pier Luigi
Casadio, Rita
Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
title Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
title_full Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
title_fullStr Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
title_full_unstemmed Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
title_short Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
title_sort huntingtin: a protein with a peculiar solvent accessible surface
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8001614/
https://www.ncbi.nlm.nih.gov/pubmed/33809039
http://dx.doi.org/10.3390/ijms22062878
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