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Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8001614/ https://www.ncbi.nlm.nih.gov/pubmed/33809039 http://dx.doi.org/10.3390/ijms22062878 |
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author | Babbi, Giulia Savojardo, Castrense Martelli, Pier Luigi Casadio, Rita |
author_facet | Babbi, Giulia Savojardo, Castrense Martelli, Pier Luigi Casadio, Rita |
author_sort | Babbi, Giulia |
collection | PubMed |
description | Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns, with the prevalence of the latter ones. We then evaluated the probability of exposed residues to be in contact with other proteins, discovering that they tend to cluster in specific regions of the protein. We then found that the remaining portions of the protein surface can contain calcium-binding sites that we propose here as putative mediators for the protein to interact with membranes. Our findings are justified in relation to the present knowledge of huntingtin functional annotation. |
format | Online Article Text |
id | pubmed-8001614 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-80016142021-03-28 Huntingtin: A Protein with a Peculiar Solvent Accessible Surface Babbi, Giulia Savojardo, Castrense Martelli, Pier Luigi Casadio, Rita Int J Mol Sci Article Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns, with the prevalence of the latter ones. We then evaluated the probability of exposed residues to be in contact with other proteins, discovering that they tend to cluster in specific regions of the protein. We then found that the remaining portions of the protein surface can contain calcium-binding sites that we propose here as putative mediators for the protein to interact with membranes. Our findings are justified in relation to the present knowledge of huntingtin functional annotation. MDPI 2021-03-12 /pmc/articles/PMC8001614/ /pubmed/33809039 http://dx.doi.org/10.3390/ijms22062878 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Babbi, Giulia Savojardo, Castrense Martelli, Pier Luigi Casadio, Rita Huntingtin: A Protein with a Peculiar Solvent Accessible Surface |
title | Huntingtin: A Protein with a Peculiar Solvent Accessible Surface |
title_full | Huntingtin: A Protein with a Peculiar Solvent Accessible Surface |
title_fullStr | Huntingtin: A Protein with a Peculiar Solvent Accessible Surface |
title_full_unstemmed | Huntingtin: A Protein with a Peculiar Solvent Accessible Surface |
title_short | Huntingtin: A Protein with a Peculiar Solvent Accessible Surface |
title_sort | huntingtin: a protein with a peculiar solvent accessible surface |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8001614/ https://www.ncbi.nlm.nih.gov/pubmed/33809039 http://dx.doi.org/10.3390/ijms22062878 |
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