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Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone

Fungi in terrestrial environments are known to play a key role in carbon and nitrogen biogeochemistry and exhibit high diversity. In contrast, the diversity and function of fungi in the ocean has remained underexplored and largely neglected. In the eastern tropical North Pacific oxygen minimum zone,...

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Detalles Bibliográficos
Autores principales: Peng, Xuefeng, Valentine, David L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8002691/
https://www.ncbi.nlm.nih.gov/pubmed/33802893
http://dx.doi.org/10.3390/jof7030218
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author Peng, Xuefeng
Valentine, David L.
author_facet Peng, Xuefeng
Valentine, David L.
author_sort Peng, Xuefeng
collection PubMed
description Fungi in terrestrial environments are known to play a key role in carbon and nitrogen biogeochemistry and exhibit high diversity. In contrast, the diversity and function of fungi in the ocean has remained underexplored and largely neglected. In the eastern tropical North Pacific oxygen minimum zone, we examined the fungal diversity by sequencing the internal transcribed spacer region 2 (ITS2) and mining a metagenome dataset collected from the same region. Additionally, we coupled (15)N-tracer experiments with a selective inhibition method to determine the potential contribution of marine fungi to nitrous oxide (N(2)O) production. Fungal communities evaluated by ITS2 sequencing were dominated by the phyla Basidiomycota and Ascomycota at most depths. However, the metagenome dataset showed that about one third of the fungal community belong to early-diverging phyla. Fungal N(2)O production rates peaked at the oxic–anoxic interface of the water column, and when integrated from the oxycline to the top of the anoxic depths, fungi accounted for 18–22% of total N(2)O production. Our findings highlight the limitation of ITS-based methods typically used to investigate terrestrial fungal diversity and indicate that fungi may play an active role in marine nitrogen cycling.
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spelling pubmed-80026912021-03-28 Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone Peng, Xuefeng Valentine, David L. J Fungi (Basel) Article Fungi in terrestrial environments are known to play a key role in carbon and nitrogen biogeochemistry and exhibit high diversity. In contrast, the diversity and function of fungi in the ocean has remained underexplored and largely neglected. In the eastern tropical North Pacific oxygen minimum zone, we examined the fungal diversity by sequencing the internal transcribed spacer region 2 (ITS2) and mining a metagenome dataset collected from the same region. Additionally, we coupled (15)N-tracer experiments with a selective inhibition method to determine the potential contribution of marine fungi to nitrous oxide (N(2)O) production. Fungal communities evaluated by ITS2 sequencing were dominated by the phyla Basidiomycota and Ascomycota at most depths. However, the metagenome dataset showed that about one third of the fungal community belong to early-diverging phyla. Fungal N(2)O production rates peaked at the oxic–anoxic interface of the water column, and when integrated from the oxycline to the top of the anoxic depths, fungi accounted for 18–22% of total N(2)O production. Our findings highlight the limitation of ITS-based methods typically used to investigate terrestrial fungal diversity and indicate that fungi may play an active role in marine nitrogen cycling. MDPI 2021-03-17 /pmc/articles/PMC8002691/ /pubmed/33802893 http://dx.doi.org/10.3390/jof7030218 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Peng, Xuefeng
Valentine, David L.
Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone
title Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone
title_full Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone
title_fullStr Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone
title_full_unstemmed Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone
title_short Diversity and N(2)O Production Potential of Fungi in an Oceanic Oxygen Minimum Zone
title_sort diversity and n(2)o production potential of fungi in an oceanic oxygen minimum zone
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8002691/
https://www.ncbi.nlm.nih.gov/pubmed/33802893
http://dx.doi.org/10.3390/jof7030218
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