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Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer
SIMPLE SUMMARY: Human-exhaled volatile organic compounds (VOCs) can be altered by lung cancer and become identifiable biomarkers. We used selected ion flow tube mass spectrometry (SIFT-MS) to quantitatively analyze 116 kinds of VOCs, which were exhaled by 148 lung cancer patients and 168 healthy ind...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8003836/ https://www.ncbi.nlm.nih.gov/pubmed/33801001 http://dx.doi.org/10.3390/cancers13061431 |
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author | Tsou, Ping-Hsien Lin, Zong-Lin Pan, Yu-Chiang Yang, Hui-Chen Chang, Chien-Jen Liang, Sheng-Kai Wen, Yueh-Feng Chang, Chia-Hao Chang, Lih-Yu Yu, Kai-Lun Liu, Chia-Jung Keng, Li-Ta Lee, Meng-Rui Ko, Jen-Chung Huang, Guan-Hua Li, Yaw-Kuen |
author_facet | Tsou, Ping-Hsien Lin, Zong-Lin Pan, Yu-Chiang Yang, Hui-Chen Chang, Chien-Jen Liang, Sheng-Kai Wen, Yueh-Feng Chang, Chia-Hao Chang, Lih-Yu Yu, Kai-Lun Liu, Chia-Jung Keng, Li-Ta Lee, Meng-Rui Ko, Jen-Chung Huang, Guan-Hua Li, Yaw-Kuen |
author_sort | Tsou, Ping-Hsien |
collection | PubMed |
description | SIMPLE SUMMARY: Human-exhaled volatile organic compounds (VOCs) can be altered by lung cancer and become identifiable biomarkers. We used selected ion flow tube mass spectrometry (SIFT-MS) to quantitatively analyze 116 kinds of VOCs, which were exhaled by 148 lung cancer patients and 168 healthy individuals and collected from the environment to obtain a group of comprehensive data. A predictive model yielding 0.92 accuracy, 0.96 sensitivity, 0.88 specificity, and 0.98 area under the curve (AUC) was established using an advanced machine learning eXtreme Gradient Boosting (XGBoost) algorithm that considered the influences of exhaled and environmental VOCs. ABSTRACT: (1) Background: Lung cancer is silent in its early stages and fatal in its advanced stages. The current examinations for lung cancer are usually based on imaging. Conventional chest X-rays lack accuracy, and chest computed tomography (CT) is associated with radiation exposure and cost, limiting screening effectiveness. Breathomics, a noninvasive strategy, has recently been studied extensively. Volatile organic compounds (VOCs) derived from human breath can reflect metabolic changes caused by diseases and possibly serve as biomarkers of lung cancer. (2) Methods: The selected ion flow tube mass spectrometry (SIFT-MS) technique was used to quantitatively analyze 116 VOCs in breath samples from 148 patients with histologically confirmed lung cancers and 168 healthy volunteers. We used eXtreme Gradient Boosting (XGBoost), a machine learning method, to build a model for predicting lung cancer occurrence based on quantitative VOC measurements. (3) Results: The proposed prediction model achieved better performance than other previous approaches, with an accuracy, sensitivity, specificity, and area under the curve (AUC) of 0.89, 0.82, 0.94, and 0.95, respectively. When we further adjusted the confounding effect of environmental VOCs on the relationship between participants’ exhaled VOCs and lung cancer occurrence, our model was improved to reach 0.92 accuracy, 0.96 sensitivity, 0.88 specificity, and 0.98 AUC. (4) Conclusion: A quantitative VOCs databank integrated with the application of an XGBoost classifier provides a persuasive platform for lung cancer prediction. |
format | Online Article Text |
id | pubmed-8003836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-80038362021-03-28 Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer Tsou, Ping-Hsien Lin, Zong-Lin Pan, Yu-Chiang Yang, Hui-Chen Chang, Chien-Jen Liang, Sheng-Kai Wen, Yueh-Feng Chang, Chia-Hao Chang, Lih-Yu Yu, Kai-Lun Liu, Chia-Jung Keng, Li-Ta Lee, Meng-Rui Ko, Jen-Chung Huang, Guan-Hua Li, Yaw-Kuen Cancers (Basel) Article SIMPLE SUMMARY: Human-exhaled volatile organic compounds (VOCs) can be altered by lung cancer and become identifiable biomarkers. We used selected ion flow tube mass spectrometry (SIFT-MS) to quantitatively analyze 116 kinds of VOCs, which were exhaled by 148 lung cancer patients and 168 healthy individuals and collected from the environment to obtain a group of comprehensive data. A predictive model yielding 0.92 accuracy, 0.96 sensitivity, 0.88 specificity, and 0.98 area under the curve (AUC) was established using an advanced machine learning eXtreme Gradient Boosting (XGBoost) algorithm that considered the influences of exhaled and environmental VOCs. ABSTRACT: (1) Background: Lung cancer is silent in its early stages and fatal in its advanced stages. The current examinations for lung cancer are usually based on imaging. Conventional chest X-rays lack accuracy, and chest computed tomography (CT) is associated with radiation exposure and cost, limiting screening effectiveness. Breathomics, a noninvasive strategy, has recently been studied extensively. Volatile organic compounds (VOCs) derived from human breath can reflect metabolic changes caused by diseases and possibly serve as biomarkers of lung cancer. (2) Methods: The selected ion flow tube mass spectrometry (SIFT-MS) technique was used to quantitatively analyze 116 VOCs in breath samples from 148 patients with histologically confirmed lung cancers and 168 healthy volunteers. We used eXtreme Gradient Boosting (XGBoost), a machine learning method, to build a model for predicting lung cancer occurrence based on quantitative VOC measurements. (3) Results: The proposed prediction model achieved better performance than other previous approaches, with an accuracy, sensitivity, specificity, and area under the curve (AUC) of 0.89, 0.82, 0.94, and 0.95, respectively. When we further adjusted the confounding effect of environmental VOCs on the relationship between participants’ exhaled VOCs and lung cancer occurrence, our model was improved to reach 0.92 accuracy, 0.96 sensitivity, 0.88 specificity, and 0.98 AUC. (4) Conclusion: A quantitative VOCs databank integrated with the application of an XGBoost classifier provides a persuasive platform for lung cancer prediction. MDPI 2021-03-21 /pmc/articles/PMC8003836/ /pubmed/33801001 http://dx.doi.org/10.3390/cancers13061431 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Tsou, Ping-Hsien Lin, Zong-Lin Pan, Yu-Chiang Yang, Hui-Chen Chang, Chien-Jen Liang, Sheng-Kai Wen, Yueh-Feng Chang, Chia-Hao Chang, Lih-Yu Yu, Kai-Lun Liu, Chia-Jung Keng, Li-Ta Lee, Meng-Rui Ko, Jen-Chung Huang, Guan-Hua Li, Yaw-Kuen Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer |
title | Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer |
title_full | Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer |
title_fullStr | Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer |
title_full_unstemmed | Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer |
title_short | Exploring Volatile Organic Compounds in Breath for High-Accuracy Prediction of Lung Cancer |
title_sort | exploring volatile organic compounds in breath for high-accuracy prediction of lung cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8003836/ https://www.ncbi.nlm.nih.gov/pubmed/33801001 http://dx.doi.org/10.3390/cancers13061431 |
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