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Quantum Chemical Microsolvation by Automated Water Placement

We developed a quantitative approach to quantum chemical microsolvation. Key in our methodology is the automatic placement of individual solvent molecules based on the free energy solvation thermodynamics derived from molecular dynamics (MD) simulations and grid inhomogeneous solvation theory (GIST)...

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Detalles Bibliográficos
Autores principales: Steiner, Miguel, Holzknecht, Tanja, Schauperl, Michael, Podewitz, Maren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8005176/
https://www.ncbi.nlm.nih.gov/pubmed/33806731
http://dx.doi.org/10.3390/molecules26061793
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author Steiner, Miguel
Holzknecht, Tanja
Schauperl, Michael
Podewitz, Maren
author_facet Steiner, Miguel
Holzknecht, Tanja
Schauperl, Michael
Podewitz, Maren
author_sort Steiner, Miguel
collection PubMed
description We developed a quantitative approach to quantum chemical microsolvation. Key in our methodology is the automatic placement of individual solvent molecules based on the free energy solvation thermodynamics derived from molecular dynamics (MD) simulations and grid inhomogeneous solvation theory (GIST). This protocol enabled us to rigorously define the number, position, and orientation of individual solvent molecules and to determine their interaction with the solute based on physical quantities. The generated solute–solvent clusters served as an input for subsequent quantum chemical investigations. We showcased the applicability, scope, and limitations of this computational approach for a number of small molecules, including urea, 2-aminobenzothiazole, (+)-syn-benzotriborneol, benzoic acid, and helicene. Our results show excellent agreement with the available ab initio molecular dynamics data and experimental results.
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spelling pubmed-80051762021-03-29 Quantum Chemical Microsolvation by Automated Water Placement Steiner, Miguel Holzknecht, Tanja Schauperl, Michael Podewitz, Maren Molecules Article We developed a quantitative approach to quantum chemical microsolvation. Key in our methodology is the automatic placement of individual solvent molecules based on the free energy solvation thermodynamics derived from molecular dynamics (MD) simulations and grid inhomogeneous solvation theory (GIST). This protocol enabled us to rigorously define the number, position, and orientation of individual solvent molecules and to determine their interaction with the solute based on physical quantities. The generated solute–solvent clusters served as an input for subsequent quantum chemical investigations. We showcased the applicability, scope, and limitations of this computational approach for a number of small molecules, including urea, 2-aminobenzothiazole, (+)-syn-benzotriborneol, benzoic acid, and helicene. Our results show excellent agreement with the available ab initio molecular dynamics data and experimental results. MDPI 2021-03-23 /pmc/articles/PMC8005176/ /pubmed/33806731 http://dx.doi.org/10.3390/molecules26061793 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Steiner, Miguel
Holzknecht, Tanja
Schauperl, Michael
Podewitz, Maren
Quantum Chemical Microsolvation by Automated Water Placement
title Quantum Chemical Microsolvation by Automated Water Placement
title_full Quantum Chemical Microsolvation by Automated Water Placement
title_fullStr Quantum Chemical Microsolvation by Automated Water Placement
title_full_unstemmed Quantum Chemical Microsolvation by Automated Water Placement
title_short Quantum Chemical Microsolvation by Automated Water Placement
title_sort quantum chemical microsolvation by automated water placement
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8005176/
https://www.ncbi.nlm.nih.gov/pubmed/33806731
http://dx.doi.org/10.3390/molecules26061793
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