Cargando…

Rumen Epithelial Communities Share a Core Bacterial Microbiota: A Meta-Analysis of 16S rRNA Gene Illumina MiSeq Sequencing Datasets

In this meta-analysis, 17 rumen epithelial 16S rRNA gene Illumina MiSeq amplicon sequencing data sets were analyzed to identify a core rumen epithelial microbiota and core rumen epithelial OTUs shared between the different studies included. Sequences were quality-filtered and screened for chimeric s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Anderson, Chiron J., Koester, Lucas R., Schmitz-Esser, Stephan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2021
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8005654/ https://www.ncbi.nlm.nih.gov/pubmed/33790876 http://dx.doi.org/10.3389/fmicb.2021.625400

Ejemplares similares

An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform
por: Fadrosh, Douglas W, et al.
Publicado: (2014)

A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
por: Burke, Catherine M., et al.
Publicado: (2016)

Illumina MiSeq sequencing reveals the effects of grape seed procyanidin on rumen archaeal communities in vitro
por: Zhang, Hua, et al.
Publicado: (2020)

IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data
por: Mysara, Mohamed, et al.
Publicado: (2016)

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
por: Wen, Chongqing, et al.
Publicado: (2017)

A preliminary study on the potential of Nanopore MinION and Illumina MiSeq 16S rRNA gene sequencing to characterize building-dust microbiomes
por: Nygaard, Anders B., et al.
Publicado: (2020)

Illumina MiSeq sequencing analysis of fungal diversity in stored dates
por: Al-Bulushi, Ismail M., et al.
Publicado: (2017)

Perspectives of using Illumina MiSeq for identification of arbuscular mycorrhizal fungi
por: Kryukov, A.A., et al.
Publicado: (2020)

Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform
por: Videnska, Petra, et al.
Publicado: (2019)

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
por: Caporaso, J Gregory, et al.
Publicado: (2012)

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
por: Schirmer, Melanie, et al.
Publicado: (2015)

Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome
por: Salamon, Dominika, et al.
Publicado: (2022)

Influence of a sodium-saccharin sweetener on the rumen content and rumen epithelium microbiota in dairy cattle during heat stress
por: Koester, Lucas R, et al.
Publicado: (2022)

Quasispecies Analyses of the HIV-1 Near-full-length Genome With Illumina MiSeq
por: Ode, Hirotaka, et al.
Publicado: (2015)

Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene
por: Van den Hoecke, Silvie, et al.
Publicado: (2016)

Qualitative and quantitative assessment of Illumina’s forensic STR and SNP kits on MiSeq FGx™
por: Sharma, Vishakha, et al.
Publicado: (2017)

Whole-Genome Sequencing of Porcine Epidemic Diarrhea Virus by Illumina MiSeq Platform
por: Wang, Leyi, et al.
Publicado: (2015)

Illumina MiSeq Analysis and Comparison of Freshwater Microalgal Communities on Ulleungdo and Dokdo Islands
por: YUN, HYUN-SIK, et al.
Publicado: (2019)

Bacterial characterization of Beijing drinking water by flow cytometry and MiSeq sequencing of the 16S rRNA gene
por: Liu, Tingting, et al.
Publicado: (2016)

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
por: Nakao, Ryohei, et al.
Publicado: (2021)

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
por: Shokralla, Shadi, et al.
Publicado: (2015)

Illumina MiSeq Sequencing for Preliminary Analysis of Microbiome Causing Primary Endodontic Infections in Egypt
por: Tawfik, Sally Ali, et al.
Publicado: (2018)

Assessment of seawater bacterial infection in rabbit tibia by Illumina MiSeq sequencing and bacterial culture
por: Wang, Du, et al.
Publicado: (2021)

Gut microbiome profiling of neonates using Nanopore MinION and Illumina MiSeq sequencing
por: Cha, Teahyen, et al.
Publicado: (2023)

Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil
por: Stevens, Bo Maxwell, et al.
Publicado: (2023)

Illumina MiSeq 16S amplicon sequence analysis of bovine respiratory disease associated bacteria in lung and mediastinal lymph node tissue
por: Johnston, Dayle, et al.
Publicado: (2017)

Characterization of 13 microsatellite markers for Calochortus gunnisonii (Liliaceae) from Illumina MiSeq sequencing(1)
por: Fuller, Ryan S., et al.
Publicado: (2015)

Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
por: Grubisha, Lisa C., et al.
Publicado: (2014)

Development of microsatellite markers using Illumina MiSeq sequencing to characterize Ephedra gerardiana (Ephedraceae)(1)
por: De, Ji, et al.
Publicado: (2017)

Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
por: Tshiabuila, Derek, et al.
Publicado: (2022)

A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform
por: Pichler, Monica, et al.
Publicado: (2018)

Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data
por: Jervis-Bardy, Jake, et al.
Publicado: (2015)

Assessment of Bifidobacterium Species Using groEL Gene on the Basis of Illumina MiSeq High-Throughput Sequencing
por: Hu, Lujun, et al.
Publicado: (2017)

Illumina-MiSeq analysis of fungi in acid lime roots reveals dominance of Fusarium and variation in fungal taxa
por: Al-Sadi, Abdullah M., et al.
Publicado: (2018)

Effect of Processing Treatment and Modified Atmosphere Packing on Carrot’s Microbial Community Structure by Illumina MiSeq Sequencing
por: Ratajczak, Katarzyna, et al.
Publicado: (2022)

Microbial genome (Illumina MiSeq) sequencing of drinking water treatment residuals to evaluate compatibility with environmental applications
por: Turner, Tomi, et al.
Publicado: (2023)

Differences in the gut microbiota of dogs (Canis lupus familiaris) fed a natural diet or a commercial feed revealed by the Illumina MiSeq platform
por: Kim, Junhyung, et al.
Publicado: (2017)

Characterization of Intestinal Microbiomes of Hirschsprung’s Disease Patients with or without Enterocolitis Using Illumina-MiSeq High-Throughput Sequencing
por: Li, Yuqing, et al.
Publicado: (2016)

In‐depth comparative analysis of Illumina(®) MiSeq run metrics: Development of a wet‐lab quality assessment tool
por: Kastanis, George John, et al.
Publicado: (2019)

Isolation and characterization of 21 polymorphic microsatellite loci for the rockpool shrimp Palaemon elegans using Illumina MiSeq sequencing
por: González-Castellano, Inés, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_e31psqckh2n0od7sbgq52tgljj