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Solvent Effects and Aggregation Phenomena Studied by Vibrational Optical Activity and Molecular Dynamics: The Case of Pantolactone
[Image: see text] Raman and Raman optical activity (ROA), IR, and vibrational circular dichroism (VCD) spectra of (R)- and (S)-pantolactone have been recorded in three solvents. ROA has been employed on water and DMSO solutions, VCD on DMSO and CCl(4) solutions. In the last solvent, monomer–dimer eq...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8007093/ https://www.ncbi.nlm.nih.gov/pubmed/32396357 http://dx.doi.org/10.1021/acs.jpcb.0c01483 |
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author | Ghidinelli, Simone Abbate, Sergio Koshoubu, Jun Araki, Yasuyuki Wada, Takehiko Longhi, Giovanna |
author_facet | Ghidinelli, Simone Abbate, Sergio Koshoubu, Jun Araki, Yasuyuki Wada, Takehiko Longhi, Giovanna |
author_sort | Ghidinelli, Simone |
collection | PubMed |
description | [Image: see text] Raman and Raman optical activity (ROA), IR, and vibrational circular dichroism (VCD) spectra of (R)- and (S)-pantolactone have been recorded in three solvents. ROA has been employed on water and DMSO solutions, VCD on DMSO and CCl(4) solutions. In the last solvent, monomer–dimer equilibrium is present. Due to the low conformational flexibility of the isolated molecule and to the possibility of aggregation, this compound has been used here to test different protocols for computation of the spectroscopic responses taking into account solvent effects. Molecular dynamics (MD) simulations have been carried out together with statistical clustering methods based on collective variables to extract the structures needed to calculate the spectra. Quantum mechanical DFT calculations based on PCM are compared with approaches based on different representations of the solvent shell (MM or QM level). Appropriate treatment of the solvent permits obtaining of good band-shapes, with the added advantage that the MD analysis allows one to take into account flexibility of dimeric structures justifying the broadness of observed bands and the absence of intense VCD couplets in the carbonyl and OH stretching regions. |
format | Online Article Text |
id | pubmed-8007093 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-80070932021-03-30 Solvent Effects and Aggregation Phenomena Studied by Vibrational Optical Activity and Molecular Dynamics: The Case of Pantolactone Ghidinelli, Simone Abbate, Sergio Koshoubu, Jun Araki, Yasuyuki Wada, Takehiko Longhi, Giovanna J Phys Chem B [Image: see text] Raman and Raman optical activity (ROA), IR, and vibrational circular dichroism (VCD) spectra of (R)- and (S)-pantolactone have been recorded in three solvents. ROA has been employed on water and DMSO solutions, VCD on DMSO and CCl(4) solutions. In the last solvent, monomer–dimer equilibrium is present. Due to the low conformational flexibility of the isolated molecule and to the possibility of aggregation, this compound has been used here to test different protocols for computation of the spectroscopic responses taking into account solvent effects. Molecular dynamics (MD) simulations have been carried out together with statistical clustering methods based on collective variables to extract the structures needed to calculate the spectra. Quantum mechanical DFT calculations based on PCM are compared with approaches based on different representations of the solvent shell (MM or QM level). Appropriate treatment of the solvent permits obtaining of good band-shapes, with the added advantage that the MD analysis allows one to take into account flexibility of dimeric structures justifying the broadness of observed bands and the absence of intense VCD couplets in the carbonyl and OH stretching regions. American Chemical Society 2020-05-12 2020-06-04 /pmc/articles/PMC8007093/ /pubmed/32396357 http://dx.doi.org/10.1021/acs.jpcb.0c01483 Text en Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Ghidinelli, Simone Abbate, Sergio Koshoubu, Jun Araki, Yasuyuki Wada, Takehiko Longhi, Giovanna Solvent Effects and Aggregation Phenomena Studied by Vibrational Optical Activity and Molecular Dynamics: The Case of Pantolactone |
title | Solvent Effects and Aggregation Phenomena Studied
by Vibrational Optical Activity and Molecular Dynamics: The Case of
Pantolactone |
title_full | Solvent Effects and Aggregation Phenomena Studied
by Vibrational Optical Activity and Molecular Dynamics: The Case of
Pantolactone |
title_fullStr | Solvent Effects and Aggregation Phenomena Studied
by Vibrational Optical Activity and Molecular Dynamics: The Case of
Pantolactone |
title_full_unstemmed | Solvent Effects and Aggregation Phenomena Studied
by Vibrational Optical Activity and Molecular Dynamics: The Case of
Pantolactone |
title_short | Solvent Effects and Aggregation Phenomena Studied
by Vibrational Optical Activity and Molecular Dynamics: The Case of
Pantolactone |
title_sort | solvent effects and aggregation phenomena studied
by vibrational optical activity and molecular dynamics: the case of
pantolactone |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8007093/ https://www.ncbi.nlm.nih.gov/pubmed/32396357 http://dx.doi.org/10.1021/acs.jpcb.0c01483 |
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