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Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden

The complete circular chloroplast (cp) genome of wild Hordeum roshevitzii Bowden was sequenced and reported in this study. The complete chloroplast genome of wild H. roshevitzii was 12,753 bp in length, including a pair of inverted repeat regions (IRA/IRB) of 21,587 bp separated by one small single-...

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Autores principales: Zhang, Ruochen, Li, Xiuzhang, Chen, Zhenjiang, Yao, Xiang, Li, Tao, Li, Chunjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8008887/
https://www.ncbi.nlm.nih.gov/pubmed/33829089
http://dx.doi.org/10.1080/23802359.2021.1903358
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author Zhang, Ruochen
Li, Xiuzhang
Chen, Zhenjiang
Yao, Xiang
Li, Tao
Li, Chunjie
author_facet Zhang, Ruochen
Li, Xiuzhang
Chen, Zhenjiang
Yao, Xiang
Li, Tao
Li, Chunjie
author_sort Zhang, Ruochen
collection PubMed
description The complete circular chloroplast (cp) genome of wild Hordeum roshevitzii Bowden was sequenced and reported in this study. The complete chloroplast genome of wild H. roshevitzii was 12,753 bp in length, including a pair of inverted repeat regions (IRA/IRB) of 21,587 bp separated by one small single-copy (SSC) region of 12,753 bp and one large single-copy (LSC) region of 81,138 bp. A total of 133 genes, including 85 protein-coding genes (PCGs), 40 transfer RNA genes, and 8 ribosomal RNA genes were predicted from the cp genomes. The overall GC content of the cp genome was 38.25% and the corresponding values of the IR, SSC, and LSC were 43.89%, 32.19%, and 36.21%. The phylogenetic analysis of H. roshevitzii determined that H. roshevitzii was clustered closely with Hordeum bogdanii.
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spelling pubmed-80088872021-04-06 Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden Zhang, Ruochen Li, Xiuzhang Chen, Zhenjiang Yao, Xiang Li, Tao Li, Chunjie Mitochondrial DNA B Resour Mitogenome Announcement The complete circular chloroplast (cp) genome of wild Hordeum roshevitzii Bowden was sequenced and reported in this study. The complete chloroplast genome of wild H. roshevitzii was 12,753 bp in length, including a pair of inverted repeat regions (IRA/IRB) of 21,587 bp separated by one small single-copy (SSC) region of 12,753 bp and one large single-copy (LSC) region of 81,138 bp. A total of 133 genes, including 85 protein-coding genes (PCGs), 40 transfer RNA genes, and 8 ribosomal RNA genes were predicted from the cp genomes. The overall GC content of the cp genome was 38.25% and the corresponding values of the IR, SSC, and LSC were 43.89%, 32.19%, and 36.21%. The phylogenetic analysis of H. roshevitzii determined that H. roshevitzii was clustered closely with Hordeum bogdanii. Taylor & Francis 2021-03-26 /pmc/articles/PMC8008887/ /pubmed/33829089 http://dx.doi.org/10.1080/23802359.2021.1903358 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Ruochen
Li, Xiuzhang
Chen, Zhenjiang
Yao, Xiang
Li, Tao
Li, Chunjie
Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
title Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
title_full Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
title_fullStr Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
title_full_unstemmed Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
title_short Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
title_sort complete chloroplast genome and phylogenetic analysis of a wild grass, hordeum roshevitzii bowden
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8008887/
https://www.ncbi.nlm.nih.gov/pubmed/33829089
http://dx.doi.org/10.1080/23802359.2021.1903358
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