Cargando…
Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden
The complete circular chloroplast (cp) genome of wild Hordeum roshevitzii Bowden was sequenced and reported in this study. The complete chloroplast genome of wild H. roshevitzii was 12,753 bp in length, including a pair of inverted repeat regions (IRA/IRB) of 21,587 bp separated by one small single-...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8008887/ https://www.ncbi.nlm.nih.gov/pubmed/33829089 http://dx.doi.org/10.1080/23802359.2021.1903358 |
_version_ | 1783672776206319616 |
---|---|
author | Zhang, Ruochen Li, Xiuzhang Chen, Zhenjiang Yao, Xiang Li, Tao Li, Chunjie |
author_facet | Zhang, Ruochen Li, Xiuzhang Chen, Zhenjiang Yao, Xiang Li, Tao Li, Chunjie |
author_sort | Zhang, Ruochen |
collection | PubMed |
description | The complete circular chloroplast (cp) genome of wild Hordeum roshevitzii Bowden was sequenced and reported in this study. The complete chloroplast genome of wild H. roshevitzii was 12,753 bp in length, including a pair of inverted repeat regions (IRA/IRB) of 21,587 bp separated by one small single-copy (SSC) region of 12,753 bp and one large single-copy (LSC) region of 81,138 bp. A total of 133 genes, including 85 protein-coding genes (PCGs), 40 transfer RNA genes, and 8 ribosomal RNA genes were predicted from the cp genomes. The overall GC content of the cp genome was 38.25% and the corresponding values of the IR, SSC, and LSC were 43.89%, 32.19%, and 36.21%. The phylogenetic analysis of H. roshevitzii determined that H. roshevitzii was clustered closely with Hordeum bogdanii. |
format | Online Article Text |
id | pubmed-8008887 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80088872021-04-06 Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden Zhang, Ruochen Li, Xiuzhang Chen, Zhenjiang Yao, Xiang Li, Tao Li, Chunjie Mitochondrial DNA B Resour Mitogenome Announcement The complete circular chloroplast (cp) genome of wild Hordeum roshevitzii Bowden was sequenced and reported in this study. The complete chloroplast genome of wild H. roshevitzii was 12,753 bp in length, including a pair of inverted repeat regions (IRA/IRB) of 21,587 bp separated by one small single-copy (SSC) region of 12,753 bp and one large single-copy (LSC) region of 81,138 bp. A total of 133 genes, including 85 protein-coding genes (PCGs), 40 transfer RNA genes, and 8 ribosomal RNA genes were predicted from the cp genomes. The overall GC content of the cp genome was 38.25% and the corresponding values of the IR, SSC, and LSC were 43.89%, 32.19%, and 36.21%. The phylogenetic analysis of H. roshevitzii determined that H. roshevitzii was clustered closely with Hordeum bogdanii. Taylor & Francis 2021-03-26 /pmc/articles/PMC8008887/ /pubmed/33829089 http://dx.doi.org/10.1080/23802359.2021.1903358 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Ruochen Li, Xiuzhang Chen, Zhenjiang Yao, Xiang Li, Tao Li, Chunjie Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden |
title | Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden |
title_full | Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden |
title_fullStr | Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden |
title_full_unstemmed | Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden |
title_short | Complete chloroplast genome and phylogenetic analysis of a wild grass, Hordeum roshevitzii Bowden |
title_sort | complete chloroplast genome and phylogenetic analysis of a wild grass, hordeum roshevitzii bowden |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8008887/ https://www.ncbi.nlm.nih.gov/pubmed/33829089 http://dx.doi.org/10.1080/23802359.2021.1903358 |
work_keys_str_mv | AT zhangruochen completechloroplastgenomeandphylogeneticanalysisofawildgrasshordeumroshevitziibowden AT lixiuzhang completechloroplastgenomeandphylogeneticanalysisofawildgrasshordeumroshevitziibowden AT chenzhenjiang completechloroplastgenomeandphylogeneticanalysisofawildgrasshordeumroshevitziibowden AT yaoxiang completechloroplastgenomeandphylogeneticanalysisofawildgrasshordeumroshevitziibowden AT litao completechloroplastgenomeandphylogeneticanalysisofawildgrasshordeumroshevitziibowden AT lichunjie completechloroplastgenomeandphylogeneticanalysisofawildgrasshordeumroshevitziibowden |