The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China

The complete chloroplast (cp) genome of Ilex chinensis, an important economic plant with ornamental and ecological values, was sequenced to investigate its phylogenetic relationship. The entire cp genome of I. chinensis was 157,885 bp in length with 37.61% overall GC content, including a large singl...

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Autores principales: Zhou, Yanwei, Li, Naiwei, Chen, Hong, Chong, Xinran, Li, Yunlong, Lu, Xiaoqing, Zhou, Ting, Zhang, Fan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8008935/
https://www.ncbi.nlm.nih.gov/pubmed/33829094
http://dx.doi.org/10.1080/23802359.2021.1904800
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author Zhou, Yanwei
Li, Naiwei
Chen, Hong
Chong, Xinran
Li, Yunlong
Lu, Xiaoqing
Zhou, Ting
Zhang, Fan
author_facet Zhou, Yanwei
Li, Naiwei
Chen, Hong
Chong, Xinran
Li, Yunlong
Lu, Xiaoqing
Zhou, Ting
Zhang, Fan
author_sort Zhou, Yanwei
collection PubMed
description The complete chloroplast (cp) genome of Ilex chinensis, an important economic plant with ornamental and ecological values, was sequenced to investigate its phylogenetic relationship. The entire cp genome of I. chinensis was 157,885 bp in length with 37.61% overall GC content, including a large single-copy (LSC) region of 87,289 bp, and a small single-copy (SSC) region of 18,388 bp, which were separated by a pair of inverted repeats (IRs) of 52,208 bp. The cp genome contained 135 genes, including 90 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that I. chinensis was closely related to I. szechwanensis and I. viridis species.
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spelling pubmed-80089352021-04-06 The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China Zhou, Yanwei Li, Naiwei Chen, Hong Chong, Xinran Li, Yunlong Lu, Xiaoqing Zhou, Ting Zhang, Fan Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome of Ilex chinensis, an important economic plant with ornamental and ecological values, was sequenced to investigate its phylogenetic relationship. The entire cp genome of I. chinensis was 157,885 bp in length with 37.61% overall GC content, including a large single-copy (LSC) region of 87,289 bp, and a small single-copy (SSC) region of 18,388 bp, which were separated by a pair of inverted repeats (IRs) of 52,208 bp. The cp genome contained 135 genes, including 90 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that I. chinensis was closely related to I. szechwanensis and I. viridis species. Taylor & Francis 2021-03-26 /pmc/articles/PMC8008935/ /pubmed/33829094 http://dx.doi.org/10.1080/23802359.2021.1904800 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhou, Yanwei
Li, Naiwei
Chen, Hong
Chong, Xinran
Li, Yunlong
Lu, Xiaoqing
Zhou, Ting
Zhang, Fan
The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China
title The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China
title_full The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China
title_fullStr The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China
title_full_unstemmed The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China
title_short The complete chloroplast genome sequence of Ilex chinensis Sims. (Aquifoliaceae), a folk herbal medicine plant in China
title_sort complete chloroplast genome sequence of ilex chinensis sims. (aquifoliaceae), a folk herbal medicine plant in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8008935/
https://www.ncbi.nlm.nih.gov/pubmed/33829094
http://dx.doi.org/10.1080/23802359.2021.1904800
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