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Correcting notification delay and forecasting of COVID-19 data

Since the first official case of COVID-19 was reported, many researchers around the world have spent their time trying to understand the dynamics of the virus by modeling and predicting the number of infected and deaths. The rapid spread and highly contagiousness motivate the necessity of monitoring...

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Autores principales: Sarnaglia, Alessandro J.Q., Zamprogno, Bartolomeu, Fajardo Molinares, Fabio A., de Godoi, Luciana G., Jiménez Monroy, Nátaly A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009043/
https://www.ncbi.nlm.nih.gov/pubmed/33814611
http://dx.doi.org/10.1016/j.jmaa.2021.125202
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author Sarnaglia, Alessandro J.Q.
Zamprogno, Bartolomeu
Fajardo Molinares, Fabio A.
de Godoi, Luciana G.
Jiménez Monroy, Nátaly A.
author_facet Sarnaglia, Alessandro J.Q.
Zamprogno, Bartolomeu
Fajardo Molinares, Fabio A.
de Godoi, Luciana G.
Jiménez Monroy, Nátaly A.
author_sort Sarnaglia, Alessandro J.Q.
collection PubMed
description Since the first official case of COVID-19 was reported, many researchers around the world have spent their time trying to understand the dynamics of the virus by modeling and predicting the number of infected and deaths. The rapid spread and highly contagiousness motivate the necessity of monitoring cases in real-time, aiming to keep control of the epidemic. As pointed out by [3], some pitfalls like limited infrastructure, laboratory confirmation and logistical problems may cause reporting delay, leading to distortions of the real dynamics of the confirmed cases and deaths. The aim of this study is to propose a suitable statistical methodology for modeling and forecasting daily deaths and reported cases of COVID-19, considering key features as overdispersion of data and correction of notification delay. Both, reporting delays and forecasting consider a Bayesian approach in which the daily deaths and the confirmed cases are modelled using the negative binomial (NB) distribution in order to accommodate the population heterogeneity. For the correction of notification delay, the mean number of occurrences regarding time t notified at time [Formula: see text] (mean delayed notifications) is associated to the temporal and the delay lag evolution of the notification process through a log link. With regard to daily forecasting, the functional form adopted for the number of deaths and reported cases of COVID-19 is related to the sigmoid growth equation. A variable regarding week days or days off was considered in order to account for possible reduction of the records due to the lower offer of tests on days off. To illustrate the methodology, we analyze data of deaths and infected cases of COVID-19 in Espírito Santo, Brazil. We also obtain long-term predictions.
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spelling pubmed-80090432021-03-31 Correcting notification delay and forecasting of COVID-19 data Sarnaglia, Alessandro J.Q. Zamprogno, Bartolomeu Fajardo Molinares, Fabio A. de Godoi, Luciana G. Jiménez Monroy, Nátaly A. J Math Anal Appl Article Since the first official case of COVID-19 was reported, many researchers around the world have spent their time trying to understand the dynamics of the virus by modeling and predicting the number of infected and deaths. The rapid spread and highly contagiousness motivate the necessity of monitoring cases in real-time, aiming to keep control of the epidemic. As pointed out by [3], some pitfalls like limited infrastructure, laboratory confirmation and logistical problems may cause reporting delay, leading to distortions of the real dynamics of the confirmed cases and deaths. The aim of this study is to propose a suitable statistical methodology for modeling and forecasting daily deaths and reported cases of COVID-19, considering key features as overdispersion of data and correction of notification delay. Both, reporting delays and forecasting consider a Bayesian approach in which the daily deaths and the confirmed cases are modelled using the negative binomial (NB) distribution in order to accommodate the population heterogeneity. For the correction of notification delay, the mean number of occurrences regarding time t notified at time [Formula: see text] (mean delayed notifications) is associated to the temporal and the delay lag evolution of the notification process through a log link. With regard to daily forecasting, the functional form adopted for the number of deaths and reported cases of COVID-19 is related to the sigmoid growth equation. A variable regarding week days or days off was considered in order to account for possible reduction of the records due to the lower offer of tests on days off. To illustrate the methodology, we analyze data of deaths and infected cases of COVID-19 in Espírito Santo, Brazil. We also obtain long-term predictions. Elsevier Inc. 2022-10-15 2021-03-30 /pmc/articles/PMC8009043/ /pubmed/33814611 http://dx.doi.org/10.1016/j.jmaa.2021.125202 Text en © 2021 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Sarnaglia, Alessandro J.Q.
Zamprogno, Bartolomeu
Fajardo Molinares, Fabio A.
de Godoi, Luciana G.
Jiménez Monroy, Nátaly A.
Correcting notification delay and forecasting of COVID-19 data
title Correcting notification delay and forecasting of COVID-19 data
title_full Correcting notification delay and forecasting of COVID-19 data
title_fullStr Correcting notification delay and forecasting of COVID-19 data
title_full_unstemmed Correcting notification delay and forecasting of COVID-19 data
title_short Correcting notification delay and forecasting of COVID-19 data
title_sort correcting notification delay and forecasting of covid-19 data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009043/
https://www.ncbi.nlm.nih.gov/pubmed/33814611
http://dx.doi.org/10.1016/j.jmaa.2021.125202
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