Cargando…
The complete chloroplast genome of Castanea sativa Mill. (Fagaceae)
Castanea sativa Mill. is mainly grown in the temperate regions of continental Europe, and it has a considerable economic value. In this study, the complete chloroplast genome sequence of Castanea sativa was characterized. Leaves were collected from the National Botanical Garden of Latvia. The chloro...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009113/ https://www.ncbi.nlm.nih.gov/pubmed/33829098 http://dx.doi.org/10.1080/23802359.2021.1903359 |
_version_ | 1783672816905748480 |
---|---|
author | Zhu, Cancan Zhang, Shijie Bai, Xiaoqian Guan, Fuqin Chen, Yu Zhao, Yuqiang Li, Mimi |
author_facet | Zhu, Cancan Zhang, Shijie Bai, Xiaoqian Guan, Fuqin Chen, Yu Zhao, Yuqiang Li, Mimi |
author_sort | Zhu, Cancan |
collection | PubMed |
description | Castanea sativa Mill. is mainly grown in the temperate regions of continental Europe, and it has a considerable economic value. In this study, the complete chloroplast genome sequence of Castanea sativa was characterized. Leaves were collected from the National Botanical Garden of Latvia. The chloroplast genome was determined to be 160,938 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 90,519 and 18,967 bp, respectively, which were separated by a pair of 25,726 bp inverted repeat (IR) regions. The genome is predicted to contain 130 genes, including 83 protein-coding genes, 37 tRNA genes, eight rRNA genes, and two pseudo genes. The overall GC content of the genome is 36.8%. A phylogenetic tree reconstructed by 34 chloroplast genomes reveals that C. sativa is most closely related to the clade including C. henryi, C. seguinii and C. mollissima. |
format | Online Article Text |
id | pubmed-8009113 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80091132021-04-06 The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) Zhu, Cancan Zhang, Shijie Bai, Xiaoqian Guan, Fuqin Chen, Yu Zhao, Yuqiang Li, Mimi Mitochondrial DNA B Resour Mitogenome Announcement Castanea sativa Mill. is mainly grown in the temperate regions of continental Europe, and it has a considerable economic value. In this study, the complete chloroplast genome sequence of Castanea sativa was characterized. Leaves were collected from the National Botanical Garden of Latvia. The chloroplast genome was determined to be 160,938 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 90,519 and 18,967 bp, respectively, which were separated by a pair of 25,726 bp inverted repeat (IR) regions. The genome is predicted to contain 130 genes, including 83 protein-coding genes, 37 tRNA genes, eight rRNA genes, and two pseudo genes. The overall GC content of the genome is 36.8%. A phylogenetic tree reconstructed by 34 chloroplast genomes reveals that C. sativa is most closely related to the clade including C. henryi, C. seguinii and C. mollissima. Taylor & Francis 2021-03-28 /pmc/articles/PMC8009113/ /pubmed/33829098 http://dx.doi.org/10.1080/23802359.2021.1903359 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhu, Cancan Zhang, Shijie Bai, Xiaoqian Guan, Fuqin Chen, Yu Zhao, Yuqiang Li, Mimi The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) |
title | The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) |
title_full | The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) |
title_fullStr | The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) |
title_full_unstemmed | The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) |
title_short | The complete chloroplast genome of Castanea sativa Mill. (Fagaceae) |
title_sort | complete chloroplast genome of castanea sativa mill. (fagaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009113/ https://www.ncbi.nlm.nih.gov/pubmed/33829098 http://dx.doi.org/10.1080/23802359.2021.1903359 |
work_keys_str_mv | AT zhucancan thecompletechloroplastgenomeofcastaneasativamillfagaceae AT zhangshijie thecompletechloroplastgenomeofcastaneasativamillfagaceae AT baixiaoqian thecompletechloroplastgenomeofcastaneasativamillfagaceae AT guanfuqin thecompletechloroplastgenomeofcastaneasativamillfagaceae AT chenyu thecompletechloroplastgenomeofcastaneasativamillfagaceae AT zhaoyuqiang thecompletechloroplastgenomeofcastaneasativamillfagaceae AT limimi thecompletechloroplastgenomeofcastaneasativamillfagaceae AT zhucancan completechloroplastgenomeofcastaneasativamillfagaceae AT zhangshijie completechloroplastgenomeofcastaneasativamillfagaceae AT baixiaoqian completechloroplastgenomeofcastaneasativamillfagaceae AT guanfuqin completechloroplastgenomeofcastaneasativamillfagaceae AT chenyu completechloroplastgenomeofcastaneasativamillfagaceae AT zhaoyuqiang completechloroplastgenomeofcastaneasativamillfagaceae AT limimi completechloroplastgenomeofcastaneasativamillfagaceae |