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The mitochondrial genome of Diaphanosoma excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China
Diaphanosoma excisum is the only Cladoceran in tropical freshwaters and parapatrically occurs with Diaphanosoma dubium in the transition between the tropics and subtropics. Here, we present the complete mitochondrial genome (MG) determined by next-generation sequencing and offer a phylogenetic analy...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009117/ https://www.ncbi.nlm.nih.gov/pubmed/33829108 http://dx.doi.org/10.1080/23802359.2021.1907252 |
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author | Pan, Jiaying Liu, Ping Pajk, Franja Dumont, Henri J. Han, Bo-Ping |
author_facet | Pan, Jiaying Liu, Ping Pajk, Franja Dumont, Henri J. Han, Bo-Ping |
author_sort | Pan, Jiaying |
collection | PubMed |
description | Diaphanosoma excisum is the only Cladoceran in tropical freshwaters and parapatrically occurs with Diaphanosoma dubium in the transition between the tropics and subtropics. Here, we present the complete mitochondrial genome (MG) determined by next-generation sequencing and offer a phylogenetic analysis of D. excisum. The MG of D. excisum is 17,615 bp in size, including 13 protein-coding genes (PCGs), 2 ribosomal RNA, 23 tRNA, and 2 putative control regions. The MG has a biased A + T of 65.34% for base composition. Compared to D. dubium, the MG of D. excisum has one more tRNA-Met, one unknown extra putative control region and is different in the arrangement of its tRNAs. The MG sequence and tRNA order provide valuable molecular data for understanding the phylogeny and speciation of Diaphanosoma. |
format | Online Article Text |
id | pubmed-8009117 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-80091172021-04-06 The mitochondrial genome of Diaphanosoma excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China Pan, Jiaying Liu, Ping Pajk, Franja Dumont, Henri J. Han, Bo-Ping Mitochondrial DNA B Resour Mitogenome Announcement Diaphanosoma excisum is the only Cladoceran in tropical freshwaters and parapatrically occurs with Diaphanosoma dubium in the transition between the tropics and subtropics. Here, we present the complete mitochondrial genome (MG) determined by next-generation sequencing and offer a phylogenetic analysis of D. excisum. The MG of D. excisum is 17,615 bp in size, including 13 protein-coding genes (PCGs), 2 ribosomal RNA, 23 tRNA, and 2 putative control regions. The MG has a biased A + T of 65.34% for base composition. Compared to D. dubium, the MG of D. excisum has one more tRNA-Met, one unknown extra putative control region and is different in the arrangement of its tRNAs. The MG sequence and tRNA order provide valuable molecular data for understanding the phylogeny and speciation of Diaphanosoma. Taylor & Francis 2021-03-28 /pmc/articles/PMC8009117/ /pubmed/33829108 http://dx.doi.org/10.1080/23802359.2021.1907252 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Pan, Jiaying Liu, Ping Pajk, Franja Dumont, Henri J. Han, Bo-Ping The mitochondrial genome of Diaphanosoma excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China |
title | The mitochondrial genome of Diaphanosoma
excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China |
title_full | The mitochondrial genome of Diaphanosoma
excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China |
title_fullStr | The mitochondrial genome of Diaphanosoma
excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China |
title_full_unstemmed | The mitochondrial genome of Diaphanosoma
excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China |
title_short | The mitochondrial genome of Diaphanosoma
excisum Sars, 1885 (Crustacea: Branchiopoda: Cladocera) from Hainan Island, China |
title_sort | mitochondrial genome of diaphanosoma
excisum sars, 1885 (crustacea: branchiopoda: cladocera) from hainan island, china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009117/ https://www.ncbi.nlm.nih.gov/pubmed/33829108 http://dx.doi.org/10.1080/23802359.2021.1907252 |
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