The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)

Damnacanthus indicus C.F.Gaertn. is an understorey shrub widely distributed in East Asia. In this study, the complete chloroplast genome of D. indicus was assembled and annotated. The chloroplast genome is 153,997 bp in total length, consisting of a large single-copy region (LSC 85,159 bp), a small...

Descripción completa

Detalles Bibliográficos
Autores principales: Lou, Shu-Mao, Li, Hong, Qin, Xin-Mei, Huang, Zhang-Ping, Jiang, Shui-Yuan, Huang, Xi-Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009129/
https://www.ncbi.nlm.nih.gov/pubmed/33829099
http://dx.doi.org/10.1080/23802359.2021.1903365
_version_ 1783672819984367616
author Lou, Shu-Mao
Li, Hong
Qin, Xin-Mei
Huang, Zhang-Ping
Jiang, Shui-Yuan
Huang, Xi-Yang
author_facet Lou, Shu-Mao
Li, Hong
Qin, Xin-Mei
Huang, Zhang-Ping
Jiang, Shui-Yuan
Huang, Xi-Yang
author_sort Lou, Shu-Mao
collection PubMed
description Damnacanthus indicus C.F.Gaertn. is an understorey shrub widely distributed in East Asia. In this study, the complete chloroplast genome of D. indicus was assembled and annotated. The chloroplast genome is 153,997 bp in total length, consisting of a large single-copy region (LSC 85,159 bp), a small single-copy region (SSC 17,584 bp) and two inverted repeat regions (25,627 bp for IRA and IRB,respectively). It contains 134 genes, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that D. indicus is sister to Mitchella repens, suggesting a close relationship of the two genera.
format Online
Article
Text
id pubmed-8009129
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-80091292021-04-06 The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae) Lou, Shu-Mao Li, Hong Qin, Xin-Mei Huang, Zhang-Ping Jiang, Shui-Yuan Huang, Xi-Yang Mitochondrial DNA B Resour Mitogenome Announcement Damnacanthus indicus C.F.Gaertn. is an understorey shrub widely distributed in East Asia. In this study, the complete chloroplast genome of D. indicus was assembled and annotated. The chloroplast genome is 153,997 bp in total length, consisting of a large single-copy region (LSC 85,159 bp), a small single-copy region (SSC 17,584 bp) and two inverted repeat regions (25,627 bp for IRA and IRB,respectively). It contains 134 genes, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis indicated that D. indicus is sister to Mitchella repens, suggesting a close relationship of the two genera. Taylor & Francis 2021-03-28 /pmc/articles/PMC8009129/ /pubmed/33829099 http://dx.doi.org/10.1080/23802359.2021.1903365 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Lou, Shu-Mao
Li, Hong
Qin, Xin-Mei
Huang, Zhang-Ping
Jiang, Shui-Yuan
Huang, Xi-Yang
The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)
title The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)
title_full The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)
title_fullStr The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)
title_full_unstemmed The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)
title_short The complete chloroplast genome of Damnacanthus indicus C.F.Gaertn. (Rubiaceae)
title_sort complete chloroplast genome of damnacanthus indicus c.f.gaertn. (rubiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009129/
https://www.ncbi.nlm.nih.gov/pubmed/33829099
http://dx.doi.org/10.1080/23802359.2021.1903365
work_keys_str_mv AT loushumao thecompletechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT lihong thecompletechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT qinxinmei thecompletechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT huangzhangping thecompletechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT jiangshuiyuan thecompletechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT huangxiyang thecompletechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT loushumao completechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT lihong completechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT qinxinmei completechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT huangzhangping completechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT jiangshuiyuan completechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae
AT huangxiyang completechloroplastgenomeofdamnacanthusindicuscfgaertnrubiaceae

Ejemplares similares