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COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data

Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular sub...

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Autores principales: He, Song, Song, Xinyu, Yang, Xiaoxi, Yu, Jijun, Wen, Yuqi, Wu, Lianlian, Yan, Bowei, Feng, Jiannan, Bo, Xiaochen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009357/
https://www.ncbi.nlm.nih.gov/pubmed/33735194
http://dx.doi.org/10.1371/journal.pcbi.1008769
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author He, Song
Song, Xinyu
Yang, Xiaoxi
Yu, Jijun
Wen, Yuqi
Wu, Lianlian
Yan, Bowei
Feng, Jiannan
Bo, Xiaochen
author_facet He, Song
Song, Xinyu
Yang, Xiaoxi
Yu, Jijun
Wen, Yuqi
Wu, Lianlian
Yan, Bowei
Feng, Jiannan
Bo, Xiaochen
author_sort He, Song
collection PubMed
description Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular subtypes is essential. The lack of intuitive and easy-to-use analytical tools has posed a barrier. Here, we report on the development of the COnsensus Molecular SUbtype of Cancer (COMSUC) web server. With COMSUC, users can explore consensus molecular subtypes of more than 30 cancers based on eight clustering methods, five types of omics data from public reference datasets or users’ private data, and three consensus clustering methods. The web server provides interactive and modifiable visualization, and publishable output of analysis results. Researchers can also exchange consensus subtype results with collaborators via project IDs. COMSUC is now publicly and freely available with no login requirement at http://comsuc.bioinforai.tech/ (IP address: http://59.110.25.27/). For a video summary of this web server, see S1 Video and S1 File.
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spelling pubmed-80093572021-04-07 COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data He, Song Song, Xinyu Yang, Xiaoxi Yu, Jijun Wen, Yuqi Wu, Lianlian Yan, Bowei Feng, Jiannan Bo, Xiaochen PLoS Comput Biol Research Article Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular subtypes is essential. The lack of intuitive and easy-to-use analytical tools has posed a barrier. Here, we report on the development of the COnsensus Molecular SUbtype of Cancer (COMSUC) web server. With COMSUC, users can explore consensus molecular subtypes of more than 30 cancers based on eight clustering methods, five types of omics data from public reference datasets or users’ private data, and three consensus clustering methods. The web server provides interactive and modifiable visualization, and publishable output of analysis results. Researchers can also exchange consensus subtype results with collaborators via project IDs. COMSUC is now publicly and freely available with no login requirement at http://comsuc.bioinforai.tech/ (IP address: http://59.110.25.27/). For a video summary of this web server, see S1 Video and S1 File. Public Library of Science 2021-03-18 /pmc/articles/PMC8009357/ /pubmed/33735194 http://dx.doi.org/10.1371/journal.pcbi.1008769 Text en © 2021 He et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
He, Song
Song, Xinyu
Yang, Xiaoxi
Yu, Jijun
Wen, Yuqi
Wu, Lianlian
Yan, Bowei
Feng, Jiannan
Bo, Xiaochen
COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
title COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
title_full COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
title_fullStr COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
title_full_unstemmed COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
title_short COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
title_sort comsuc: a web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009357/
https://www.ncbi.nlm.nih.gov/pubmed/33735194
http://dx.doi.org/10.1371/journal.pcbi.1008769
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