Cargando…
COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data
Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular sub...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009357/ https://www.ncbi.nlm.nih.gov/pubmed/33735194 http://dx.doi.org/10.1371/journal.pcbi.1008769 |
_version_ | 1783672857429016576 |
---|---|
author | He, Song Song, Xinyu Yang, Xiaoxi Yu, Jijun Wen, Yuqi Wu, Lianlian Yan, Bowei Feng, Jiannan Bo, Xiaochen |
author_facet | He, Song Song, Xinyu Yang, Xiaoxi Yu, Jijun Wen, Yuqi Wu, Lianlian Yan, Bowei Feng, Jiannan Bo, Xiaochen |
author_sort | He, Song |
collection | PubMed |
description | Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular subtypes is essential. The lack of intuitive and easy-to-use analytical tools has posed a barrier. Here, we report on the development of the COnsensus Molecular SUbtype of Cancer (COMSUC) web server. With COMSUC, users can explore consensus molecular subtypes of more than 30 cancers based on eight clustering methods, five types of omics data from public reference datasets or users’ private data, and three consensus clustering methods. The web server provides interactive and modifiable visualization, and publishable output of analysis results. Researchers can also exchange consensus subtype results with collaborators via project IDs. COMSUC is now publicly and freely available with no login requirement at http://comsuc.bioinforai.tech/ (IP address: http://59.110.25.27/). For a video summary of this web server, see S1 Video and S1 File. |
format | Online Article Text |
id | pubmed-8009357 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-80093572021-04-07 COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data He, Song Song, Xinyu Yang, Xiaoxi Yu, Jijun Wen, Yuqi Wu, Lianlian Yan, Bowei Feng, Jiannan Bo, Xiaochen PLoS Comput Biol Research Article Extensive amounts of multi-omics data and multiple cancer subtyping methods have been developed rapidly, and generate discrepant clustering results, which poses challenges for cancer molecular subtype research. Thus, the development of methods for the identification of cancer consensus molecular subtypes is essential. The lack of intuitive and easy-to-use analytical tools has posed a barrier. Here, we report on the development of the COnsensus Molecular SUbtype of Cancer (COMSUC) web server. With COMSUC, users can explore consensus molecular subtypes of more than 30 cancers based on eight clustering methods, five types of omics data from public reference datasets or users’ private data, and three consensus clustering methods. The web server provides interactive and modifiable visualization, and publishable output of analysis results. Researchers can also exchange consensus subtype results with collaborators via project IDs. COMSUC is now publicly and freely available with no login requirement at http://comsuc.bioinforai.tech/ (IP address: http://59.110.25.27/). For a video summary of this web server, see S1 Video and S1 File. Public Library of Science 2021-03-18 /pmc/articles/PMC8009357/ /pubmed/33735194 http://dx.doi.org/10.1371/journal.pcbi.1008769 Text en © 2021 He et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article He, Song Song, Xinyu Yang, Xiaoxi Yu, Jijun Wen, Yuqi Wu, Lianlian Yan, Bowei Feng, Jiannan Bo, Xiaochen COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
title | COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
title_full | COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
title_fullStr | COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
title_full_unstemmed | COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
title_short | COMSUC: A web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
title_sort | comsuc: a web server for the identification of consensus molecular subtypes of cancer based on multiple methods and multi-omics data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009357/ https://www.ncbi.nlm.nih.gov/pubmed/33735194 http://dx.doi.org/10.1371/journal.pcbi.1008769 |
work_keys_str_mv | AT hesong comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT songxinyu comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT yangxiaoxi comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT yujijun comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT wenyuqi comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT wulianlian comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT yanbowei comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT fengjiannan comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata AT boxiaochen comsucawebserverfortheidentificationofconsensusmolecularsubtypesofcancerbasedonmultiplemethodsandmultiomicsdata |