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Repulsive expansion dynamics in colony growth and gene expression
Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous grow...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009408/ https://www.ncbi.nlm.nih.gov/pubmed/33735192 http://dx.doi.org/10.1371/journal.pcbi.1008168 |
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author | Cao, Yangxiaolu Neu, John Blanchard, Andrew E. Lu, Ting You, Lingchong |
author_facet | Cao, Yangxiaolu Neu, John Blanchard, Andrew E. Lu, Ting You, Lingchong |
author_sort | Cao, Yangxiaolu |
collection | PubMed |
description | Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous growth and division of cells within a colony, which in turn pushes the peripheral cells outward. This process generates a repulsion velocity field at each location within the colony. Here we show that this process can be approximated as coarse-grained repulsive-expansion kinetics. This framework enables accurate and efficient simulation of growth and gene expression dynamics in radially symmetric colonies with homogenous z-directional distribution. It is robust even if cells are not spherical and vary in size. The simplicity of the resulting mathematical framework also greatly facilitates generation of mechanistic insights. |
format | Online Article Text |
id | pubmed-8009408 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-80094082021-04-07 Repulsive expansion dynamics in colony growth and gene expression Cao, Yangxiaolu Neu, John Blanchard, Andrew E. Lu, Ting You, Lingchong PLoS Comput Biol Research Article Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous growth and division of cells within a colony, which in turn pushes the peripheral cells outward. This process generates a repulsion velocity field at each location within the colony. Here we show that this process can be approximated as coarse-grained repulsive-expansion kinetics. This framework enables accurate and efficient simulation of growth and gene expression dynamics in radially symmetric colonies with homogenous z-directional distribution. It is robust even if cells are not spherical and vary in size. The simplicity of the resulting mathematical framework also greatly facilitates generation of mechanistic insights. Public Library of Science 2021-03-18 /pmc/articles/PMC8009408/ /pubmed/33735192 http://dx.doi.org/10.1371/journal.pcbi.1008168 Text en © 2021 Cao et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Cao, Yangxiaolu Neu, John Blanchard, Andrew E. Lu, Ting You, Lingchong Repulsive expansion dynamics in colony growth and gene expression |
title | Repulsive expansion dynamics in colony growth and gene expression |
title_full | Repulsive expansion dynamics in colony growth and gene expression |
title_fullStr | Repulsive expansion dynamics in colony growth and gene expression |
title_full_unstemmed | Repulsive expansion dynamics in colony growth and gene expression |
title_short | Repulsive expansion dynamics in colony growth and gene expression |
title_sort | repulsive expansion dynamics in colony growth and gene expression |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009408/ https://www.ncbi.nlm.nih.gov/pubmed/33735192 http://dx.doi.org/10.1371/journal.pcbi.1008168 |
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