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Repulsive expansion dynamics in colony growth and gene expression

Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous grow...

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Autores principales: Cao, Yangxiaolu, Neu, John, Blanchard, Andrew E., Lu, Ting, You, Lingchong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009408/
https://www.ncbi.nlm.nih.gov/pubmed/33735192
http://dx.doi.org/10.1371/journal.pcbi.1008168
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author Cao, Yangxiaolu
Neu, John
Blanchard, Andrew E.
Lu, Ting
You, Lingchong
author_facet Cao, Yangxiaolu
Neu, John
Blanchard, Andrew E.
Lu, Ting
You, Lingchong
author_sort Cao, Yangxiaolu
collection PubMed
description Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous growth and division of cells within a colony, which in turn pushes the peripheral cells outward. This process generates a repulsion velocity field at each location within the colony. Here we show that this process can be approximated as coarse-grained repulsive-expansion kinetics. This framework enables accurate and efficient simulation of growth and gene expression dynamics in radially symmetric colonies with homogenous z-directional distribution. It is robust even if cells are not spherical and vary in size. The simplicity of the resulting mathematical framework also greatly facilitates generation of mechanistic insights.
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spelling pubmed-80094082021-04-07 Repulsive expansion dynamics in colony growth and gene expression Cao, Yangxiaolu Neu, John Blanchard, Andrew E. Lu, Ting You, Lingchong PLoS Comput Biol Research Article Spatial expansion of a population of cells can arise from growth of microorganisms, plant cells, and mammalian cells. It underlies normal or dysfunctional tissue development, and it can be exploited as the foundation for programming spatial patterns. This expansion is often driven by continuous growth and division of cells within a colony, which in turn pushes the peripheral cells outward. This process generates a repulsion velocity field at each location within the colony. Here we show that this process can be approximated as coarse-grained repulsive-expansion kinetics. This framework enables accurate and efficient simulation of growth and gene expression dynamics in radially symmetric colonies with homogenous z-directional distribution. It is robust even if cells are not spherical and vary in size. The simplicity of the resulting mathematical framework also greatly facilitates generation of mechanistic insights. Public Library of Science 2021-03-18 /pmc/articles/PMC8009408/ /pubmed/33735192 http://dx.doi.org/10.1371/journal.pcbi.1008168 Text en © 2021 Cao et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Cao, Yangxiaolu
Neu, John
Blanchard, Andrew E.
Lu, Ting
You, Lingchong
Repulsive expansion dynamics in colony growth and gene expression
title Repulsive expansion dynamics in colony growth and gene expression
title_full Repulsive expansion dynamics in colony growth and gene expression
title_fullStr Repulsive expansion dynamics in colony growth and gene expression
title_full_unstemmed Repulsive expansion dynamics in colony growth and gene expression
title_short Repulsive expansion dynamics in colony growth and gene expression
title_sort repulsive expansion dynamics in colony growth and gene expression
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8009408/
https://www.ncbi.nlm.nih.gov/pubmed/33735192
http://dx.doi.org/10.1371/journal.pcbi.1008168
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