A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY

In this communication, we report on the genomic surveillance of SARS-CoV-2 using wastewater samples in Jefferson County, KY. In February 2021, we analyzed seven wastewater samples for SARS-CoV-2 genomic surveillance. Variants observed in smaller catchment areas, such as neighborhood manhole location...

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Autores principales: Fuqua, J. L., Rouchka, E.C., Waigel, S., Sokoloski, K., Chung, D., Zacharias, W., Zhang, M., Chariker, J., Talley, D., Santisteban, I., Varsani, A., Moyer, S., Holm, R. H., Yeager, R. A., Smith, T., Bhatnagar, A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2021
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8010757/
https://www.ncbi.nlm.nih.gov/pubmed/33791725
http://dx.doi.org/10.1101/2021.03.18.21253604
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author Fuqua, J. L.
Rouchka, E.C.
Waigel, S.
Sokoloski, K.
Chung, D.
Zacharias, W.
Zhang, M.
Chariker, J.
Talley, D.
Santisteban, I.
Varsani, A.
Moyer, S.
Holm, R. H.
Yeager, R. A.
Smith, T.
Bhatnagar, A.
author_facet Fuqua, J. L.
Rouchka, E.C.
Waigel, S.
Sokoloski, K.
Chung, D.
Zacharias, W.
Zhang, M.
Chariker, J.
Talley, D.
Santisteban, I.
Varsani, A.
Moyer, S.
Holm, R. H.
Yeager, R. A.
Smith, T.
Bhatnagar, A.
author_sort Fuqua, J. L.
collection PubMed
description In this communication, we report on the genomic surveillance of SARS-CoV-2 using wastewater samples in Jefferson County, KY. In February 2021, we analyzed seven wastewater samples for SARS-CoV-2 genomic surveillance. Variants observed in smaller catchment areas, such as neighborhood manhole locations, were not necessarily consistent when compared to associated variant results in downstream treatment plants, suggesting catchment size or population could impact the ability to detect diversity.
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spelling pubmed-80107572021-04-01 A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY Fuqua, J. L. Rouchka, E.C. Waigel, S. Sokoloski, K. Chung, D. Zacharias, W. Zhang, M. Chariker, J. Talley, D. Santisteban, I. Varsani, A. Moyer, S. Holm, R. H. Yeager, R. A. Smith, T. Bhatnagar, A. medRxiv Article In this communication, we report on the genomic surveillance of SARS-CoV-2 using wastewater samples in Jefferson County, KY. In February 2021, we analyzed seven wastewater samples for SARS-CoV-2 genomic surveillance. Variants observed in smaller catchment areas, such as neighborhood manhole locations, were not necessarily consistent when compared to associated variant results in downstream treatment plants, suggesting catchment size or population could impact the ability to detect diversity. Cold Spring Harbor Laboratory 2021-03-26 /pmc/articles/PMC8010757/ /pubmed/33791725 http://dx.doi.org/10.1101/2021.03.18.21253604 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Fuqua, J. L.
Rouchka, E.C.
Waigel, S.
Sokoloski, K.
Chung, D.
Zacharias, W.
Zhang, M.
Chariker, J.
Talley, D.
Santisteban, I.
Varsani, A.
Moyer, S.
Holm, R. H.
Yeager, R. A.
Smith, T.
Bhatnagar, A.
A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY
title A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY
title_full A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY
title_fullStr A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY
title_full_unstemmed A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY
title_short A rapid assessment of wastewater for genomic surveillance of SARS-CoV-2 variants at sewershed scale in Louisville, KY
title_sort rapid assessment of wastewater for genomic surveillance of sars-cov-2 variants at sewershed scale in louisville, ky
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8010757/
https://www.ncbi.nlm.nih.gov/pubmed/33791725
http://dx.doi.org/10.1101/2021.03.18.21253604
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