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A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset

This paper aims to propose a high-speed and accurate fully-automated method to detect COVID-19 from the patient's chest CT scan images. We introduce a new dataset that contains 48,260 CT scan images from 282 normal persons and 15,589 images from 95 patients with COVID-19 infections. At the firs...

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Autores principales: Rahimzadeh, Mohammad, Attar, Abolfazl, Sakhaei, Seyed Mohammad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8011666/
https://www.ncbi.nlm.nih.gov/pubmed/33821166
http://dx.doi.org/10.1016/j.bspc.2021.102588
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author Rahimzadeh, Mohammad
Attar, Abolfazl
Sakhaei, Seyed Mohammad
author_facet Rahimzadeh, Mohammad
Attar, Abolfazl
Sakhaei, Seyed Mohammad
author_sort Rahimzadeh, Mohammad
collection PubMed
description This paper aims to propose a high-speed and accurate fully-automated method to detect COVID-19 from the patient's chest CT scan images. We introduce a new dataset that contains 48,260 CT scan images from 282 normal persons and 15,589 images from 95 patients with COVID-19 infections. At the first stage, this system runs our proposed image processing algorithm that analyzes the view of the lung to discard those CT images that inside the lung is not properly visible in them. This action helps to reduce the processing time and false detections. At the next stage, we introduce a novel architecture for improving the classification accuracy of convolutional networks on images containing small important objects. Our architecture applies a new feature pyramid network designed for classification problems to the ResNet50V2 model so the model becomes able to investigate different resolutions of the image and do not lose the data of small objects. As the infections of COVID-19 exist in various scales, especially many of them are tiny, using our method helps to increase the classification performance remarkably. After running these two phases, the system determines the condition of the patient using a selected threshold. We are the first to evaluate our system in two different ways on Xception, ResNet50V2, and our model. In the single image classification stage, our model achieved 98.49% accuracy on more than 7996 test images. At the patient condition identification phase, the system correctly identified almost 234 of 245 patients with high speed. Our dataset is accessible at https://github.com/mr7495/COVID-CTset.
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spelling pubmed-80116662021-04-01 A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset Rahimzadeh, Mohammad Attar, Abolfazl Sakhaei, Seyed Mohammad Biomed Signal Process Control Article This paper aims to propose a high-speed and accurate fully-automated method to detect COVID-19 from the patient's chest CT scan images. We introduce a new dataset that contains 48,260 CT scan images from 282 normal persons and 15,589 images from 95 patients with COVID-19 infections. At the first stage, this system runs our proposed image processing algorithm that analyzes the view of the lung to discard those CT images that inside the lung is not properly visible in them. This action helps to reduce the processing time and false detections. At the next stage, we introduce a novel architecture for improving the classification accuracy of convolutional networks on images containing small important objects. Our architecture applies a new feature pyramid network designed for classification problems to the ResNet50V2 model so the model becomes able to investigate different resolutions of the image and do not lose the data of small objects. As the infections of COVID-19 exist in various scales, especially many of them are tiny, using our method helps to increase the classification performance remarkably. After running these two phases, the system determines the condition of the patient using a selected threshold. We are the first to evaluate our system in two different ways on Xception, ResNet50V2, and our model. In the single image classification stage, our model achieved 98.49% accuracy on more than 7996 test images. At the patient condition identification phase, the system correctly identified almost 234 of 245 patients with high speed. Our dataset is accessible at https://github.com/mr7495/COVID-CTset. Elsevier Ltd. 2021-07 2021-03-31 /pmc/articles/PMC8011666/ /pubmed/33821166 http://dx.doi.org/10.1016/j.bspc.2021.102588 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Rahimzadeh, Mohammad
Attar, Abolfazl
Sakhaei, Seyed Mohammad
A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset
title A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset
title_full A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset
title_fullStr A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset
title_full_unstemmed A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset
title_short A fully automated deep learning-based network for detecting COVID-19 from a new and large lung CT scan dataset
title_sort fully automated deep learning-based network for detecting covid-19 from a new and large lung ct scan dataset
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8011666/
https://www.ncbi.nlm.nih.gov/pubmed/33821166
http://dx.doi.org/10.1016/j.bspc.2021.102588
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