Cargando…

Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa

Long noncoding RNAs (lncRNAs) are RNA fragments that generally do not code for a protein but are involved in epigenetic gene regulation. In this study, lncRNAs of Brassica rapa were classified into long intergenic noncoding RNAs, natural antisense RNAs, and intronic noncoding RNAs and their expressi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mehraj, Hasan, Shea, Daniel J., Takahashi, Satoshi, Miyaji, Naomi, Akter, Ayasha, Seki, Motoaki, Dennis, Elizabeth S., Fujimoto, Ryo, Osabe, Kenji
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8011741/ https://www.ncbi.nlm.nih.gov/pubmed/33788851 http://dx.doi.org/10.1371/journal.pone.0242530

Ejemplares similares

Long noncoding RNAs in Brassica rapa L. following vernalization
por: Shea, Daniel J., et al.
Publicado: (2019)

Characterization of Histone H3 Lysine 4 and 36 Tri-methylation in Brassica rapa L.
por: Mehraj, Hasan, et al.
Publicado: (2021)

The role of FRIGIDA and FLOWERING LOCUS C genes in flowering time of Brassica rapa leafy vegetables
por: Takada, Satoko, et al.
Publicado: (2019)

The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L.
por: Akter, Ayasha, et al.
Publicado: (2019)

Characterization of FLOWERING LOCUS C 5 in Brassica rapa L.
por: Akter, Ayasha, et al.
Publicado: (2023)

Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L.
por: Takahashi, Satoshi, et al.
Publicado: (2018)

Genetics of Clubroot and Fusarium Wilt Disease Resistance in Brassica Vegetables: The Application of Marker Assisted Breeding for Disease Resistance
por: Mehraj, Hasan, et al.
Publicado: (2020)

Development of a New DNA Marker for Fusarium Yellows Resistance in Brassica rapa Vegetables
por: Miyaji, Naomi, et al.
Publicado: (2021)

Differences in the transcriptional immune response to Albugo candida between white rust resistant and susceptible cultivars in Brassica rapa L.
por: Miyaji, Naomi, et al.
Publicado: (2023)

Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa
por: Yu, Xiang, et al.
Publicado: (2013)

Identification and Characterization of Circular RNAs in Brassica rapa in Response to Plasmodiophora brassicae
por: Liu, Huishan, et al.
Publicado: (2022)

Association of microRNAs with Types of Leaf Curvature in Brassica rapa
por: Ren, Wenqing, et al.
Publicado: (2018)

The role of small RNAs in wide hybridisation and allopolyploidisation between Brassica rapa and Brassica nigra
por: Ghani, Muhammad Awais, et al.
Publicado: (2014)

Characterization and expression profiles of miRNAs in the triploid hybrids of Brassica napus and Brassica rapa
por: Zhang, Libin, et al.
Publicado: (2019)

In Arabidopsis thaliana Heterosis Level Varies among Individuals in an F(1) Hybrid Population
por: Mehraj, Hasan, et al.
Publicado: (2020)

Whole-Genome DNA Methylation Analysis in Brassica rapa subsp. perviridis in Response to Albugo candida Infection
por: Tirnaz, Soodeh, et al.
Publicado: (2022)

The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
por: Castellano, Leandro, et al.
Publicado: (2015)

Genome-wide redistribution of 24-nt siRNAs in rice gametes
por: Li, Chenxin, et al.
Publicado: (2020)

Pol IV-Dependent siRNA Production is Reduced in Brassica rapa
por: Huang, Yi, et al.
Publicado: (2013)

Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa
por: Yu, Xiang, et al.
Publicado: (2012)

Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development
por: Babaei, Saeid, et al.
Publicado: (2021)

Integrative Transcriptome, miRNAs, Degradome, and Phytohormone Analysis of Brassica rapa L. in Response to Plasmodiophora brassicae
por: Wei, Xiaochun, et al.
Publicado: (2023)

The high-throughput sequencing of small RNAs profiling in wide hybridisation and allopolyploidisation between Brassica rapa and Brassica nigra
por: Ghani, Muhammad Awais, et al.
Publicado: (2014)

Computational Identification of MicroRNAs and Their Transcript Target(s) in Field Mustard (Brassica rapa L.)
por: Hajieghrari, Behzad, et al.
Publicado: (2017)

Comparing 2-nt 3' overhangs against blunt-ended siRNAs: a systems biology based study
por: Ghosh, Preetam, et al.
Publicado: (2009)

Sequence and structure of Brassica rapa chromosome A3
por: Mun, Jeong-Hwan, et al.
Publicado: (2010)

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing
por: Kim, Bumjin, et al.
Publicado: (2012)

Genome Triplication Leads to Transcriptional Divergence of FLOWERING LOCUS C Genes During Vernalization in the Genus Brassica
por: Akter, Ayasha, et al.
Publicado: (2021)

Topically delivered 22 nt siRNAs enhance RNAi silencing of endogenous genes in two species
por: Hendrix, Bill, et al.
Publicado: (2021)

Integrating long noncoding RNAs and mRNAs expression profiles of response to Plasmodiophora brassicae infection in Pakchoi (Brassica campestris ssp. chinensis Makino)
por: Zhu, Hongfang, et al.
Publicado: (2019)

Unleashing the Genome of Brassica Rapa
por: Tang, Haibao, et al.
Publicado: (2012)

Insilco identification and characterization of superoxide dismutase gene family in Brassica rapa
por: Iqbal Qureshi, Asif M., et al.
Publicado: (2021)

Tomato DCL2b is required for the biosynthesis of 22-nt small RNAs, the resulting secondary siRNAs, and the host defense against ToMV
por: Wang, Tian, et al.
Publicado: (2018)

Extensive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including AGO5-dependent pseudogene-derived siRNAs
por: Marchais, Antonin, et al.
Publicado: (2019)

A novel class of heat-responsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa)
por: Wang, Lu, et al.
Publicado: (2011)

Noncoding RNAs
por: Hardikar, Anandwardhan A., et al.
Publicado: (2012)

Anthocyanin biosynthetic genes in Brassica rapa
por: Guo, Ning, et al.
Publicado: (2014)

NONCODE v3.0: integrative annotation of long noncoding RNAs
por: Bu, Dechao, et al.
Publicado: (2012)

Interspecific Hybridization of Transgenic Brassica napus and Brassica rapa—An Overview
por: Sohn, Soo-In, et al.
Publicado: (2022)

Decoding Noncoding RNAs: Role of MicroRNAs and Long Noncoding RNAs in Ocular Neovascularization
por: Zhang, Yan, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_2v0cujr0rl2r4j0f05vae8no4v