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Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma
Lung squamous cell carcinoma (LSCC) is one of the most common types of lung cancer in adults worldwide. With the development of modern medicine, cancer treatment that harnesses the power of the immune system might be particularly effective for treating LSCC. In this research, LSCC expression data, w...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8012856/ https://www.ncbi.nlm.nih.gov/pubmed/33816462 http://dx.doi.org/10.3389/fcell.2021.606106 |
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author | Tang, Min Li, Yukun Luo, Xianyu Xiao, Jiao Wang, Juan Zeng, Xin Hu, Qihao Chen, Xiaoyan Tan, Si-jie Hu, Jun |
author_facet | Tang, Min Li, Yukun Luo, Xianyu Xiao, Jiao Wang, Juan Zeng, Xin Hu, Qihao Chen, Xiaoyan Tan, Si-jie Hu, Jun |
author_sort | Tang, Min |
collection | PubMed |
description | Lung squamous cell carcinoma (LSCC) is one of the most common types of lung cancer in adults worldwide. With the development of modern medicine, cancer treatment that harnesses the power of the immune system might be particularly effective for treating LSCC. In this research, LSCC expression data, which quantify the cellular composition of immune cells, were analyzed by weighted gene coexpression network analysis (WGCNA) and a deconvolution algorithm based on the Gene Expression Omnibus (GEO) database, and the results indicated a close relationship between LSCC and CD8(+) T cells. Six hub genes (SYT3, METTL8, HSPB3, GFM1, ERLIN2, and CLCN2) were verified by gene–gene network and protein–protein interaction (PPI) network analyses. We found that the six hub genes were increased in cancer tissues and were closely correlated with cancer development and progression. After immune correlation analysis, METTL8 was selected as a prognostic biomarker. Finally, we found that the METTL8 levels were increased in multiple lung cancer cell lines and LSCC tissues. METTL8 inhibition could clearly induce G1 cell cycle arrest and suppress proliferation. Therefore, METTL8, which is related to CD8(+) T cell infiltration, might be identified as a potential biomarker and gene therapy target in LSCC. |
format | Online Article Text |
id | pubmed-8012856 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80128562021-04-02 Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma Tang, Min Li, Yukun Luo, Xianyu Xiao, Jiao Wang, Juan Zeng, Xin Hu, Qihao Chen, Xiaoyan Tan, Si-jie Hu, Jun Front Cell Dev Biol Cell and Developmental Biology Lung squamous cell carcinoma (LSCC) is one of the most common types of lung cancer in adults worldwide. With the development of modern medicine, cancer treatment that harnesses the power of the immune system might be particularly effective for treating LSCC. In this research, LSCC expression data, which quantify the cellular composition of immune cells, were analyzed by weighted gene coexpression network analysis (WGCNA) and a deconvolution algorithm based on the Gene Expression Omnibus (GEO) database, and the results indicated a close relationship between LSCC and CD8(+) T cells. Six hub genes (SYT3, METTL8, HSPB3, GFM1, ERLIN2, and CLCN2) were verified by gene–gene network and protein–protein interaction (PPI) network analyses. We found that the six hub genes were increased in cancer tissues and were closely correlated with cancer development and progression. After immune correlation analysis, METTL8 was selected as a prognostic biomarker. Finally, we found that the METTL8 levels were increased in multiple lung cancer cell lines and LSCC tissues. METTL8 inhibition could clearly induce G1 cell cycle arrest and suppress proliferation. Therefore, METTL8, which is related to CD8(+) T cell infiltration, might be identified as a potential biomarker and gene therapy target in LSCC. Frontiers Media S.A. 2021-03-18 /pmc/articles/PMC8012856/ /pubmed/33816462 http://dx.doi.org/10.3389/fcell.2021.606106 Text en Copyright © 2021 Tang, Li, Luo, Xiao, Wang, Zeng, Hu, Chen, Tan and Hu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Tang, Min Li, Yukun Luo, Xianyu Xiao, Jiao Wang, Juan Zeng, Xin Hu, Qihao Chen, Xiaoyan Tan, Si-jie Hu, Jun Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma |
title | Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma |
title_full | Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma |
title_fullStr | Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma |
title_full_unstemmed | Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma |
title_short | Identification of Biomarkers Related to CD8(+) T Cell Infiltration With Gene Co-expression Network in Lung Squamous Cell Carcinoma |
title_sort | identification of biomarkers related to cd8(+) t cell infiltration with gene co-expression network in lung squamous cell carcinoma |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8012856/ https://www.ncbi.nlm.nih.gov/pubmed/33816462 http://dx.doi.org/10.3389/fcell.2021.606106 |
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