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Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma

N6-methyladenosine (m(6)A) plays crucial roles in a diverse range of physiological and pathological processes, and it is believed that it tremendously promotes neoplasia and progression. However, knowledge of the molecular characteristics of m(6)A modification, its prognostic value, and the infiltra...

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Autores principales: Geng, Xiuchao, Zhang, Yuhao, Zeng, Zhaomu, Zhu, Zhongrui, Wang, Hong, Yu, Wentao, Li, Qiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8014089/
https://www.ncbi.nlm.nih.gov/pubmed/33816266
http://dx.doi.org/10.3389/fonc.2021.629718
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author Geng, Xiuchao
Zhang, Yuhao
Zeng, Zhaomu
Zhu, Zhongrui
Wang, Hong
Yu, Wentao
Li, Qiang
author_facet Geng, Xiuchao
Zhang, Yuhao
Zeng, Zhaomu
Zhu, Zhongrui
Wang, Hong
Yu, Wentao
Li, Qiang
author_sort Geng, Xiuchao
collection PubMed
description N6-methyladenosine (m(6)A) plays crucial roles in a diverse range of physiological and pathological processes, and it is believed that it tremendously promotes neoplasia and progression. However, knowledge of the molecular characteristics of m(6)A modification, its prognostic value, and the infiltration of immune cell populations in head and neck squamous cell carcinoma (HNSCC) is still insufficient. Therefore, a pan-cancer genomic analysis was systematically performed here by examining m(6)A regulators at the molecular level within 33 multiple cancer types, and the correlations between the expression of m(6)A molecules were researched using datasets from The Cancer Genome Atlas (TCGA). Based on the above analysis, insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) is upregulated in HNSCC and may serve as an independent prognostic factor of overall survival, thus showing potential as a prognostic biomarker in HNSCC. Genetic alteration analyses elucidated the reasons for the abnormal upregulation of IGF2BP2 in HNSCC. As a result, IGF2BP2 was selected for further univariate and multivariate analyses. The functions of the related genes were annotated through gene set enrichment analysis, and the activation states of multiple biological pathways were shown by gene set variation analysis. We found that LRRC59 and STIP1 may act as IGF2BP2-associated genes to have a regulatory function in the m(6)A modification. In addition, we found that the status of immune cell infiltration was correlated with the level of IGF2BP2 gene expression. Our results provide supplementation at the molecular level for epigenetic regulation in HNSCC and insight into effective immunotherapy targets and strategies.
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spelling pubmed-80140892021-04-02 Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma Geng, Xiuchao Zhang, Yuhao Zeng, Zhaomu Zhu, Zhongrui Wang, Hong Yu, Wentao Li, Qiang Front Oncol Oncology N6-methyladenosine (m(6)A) plays crucial roles in a diverse range of physiological and pathological processes, and it is believed that it tremendously promotes neoplasia and progression. However, knowledge of the molecular characteristics of m(6)A modification, its prognostic value, and the infiltration of immune cell populations in head and neck squamous cell carcinoma (HNSCC) is still insufficient. Therefore, a pan-cancer genomic analysis was systematically performed here by examining m(6)A regulators at the molecular level within 33 multiple cancer types, and the correlations between the expression of m(6)A molecules were researched using datasets from The Cancer Genome Atlas (TCGA). Based on the above analysis, insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) is upregulated in HNSCC and may serve as an independent prognostic factor of overall survival, thus showing potential as a prognostic biomarker in HNSCC. Genetic alteration analyses elucidated the reasons for the abnormal upregulation of IGF2BP2 in HNSCC. As a result, IGF2BP2 was selected for further univariate and multivariate analyses. The functions of the related genes were annotated through gene set enrichment analysis, and the activation states of multiple biological pathways were shown by gene set variation analysis. We found that LRRC59 and STIP1 may act as IGF2BP2-associated genes to have a regulatory function in the m(6)A modification. In addition, we found that the status of immune cell infiltration was correlated with the level of IGF2BP2 gene expression. Our results provide supplementation at the molecular level for epigenetic regulation in HNSCC and insight into effective immunotherapy targets and strategies. Frontiers Media S.A. 2021-03-18 /pmc/articles/PMC8014089/ /pubmed/33816266 http://dx.doi.org/10.3389/fonc.2021.629718 Text en Copyright © 2021 Geng, Zhang, Zeng, Zhu, Wang, Yu and Li http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Geng, Xiuchao
Zhang, Yuhao
Zeng, Zhaomu
Zhu, Zhongrui
Wang, Hong
Yu, Wentao
Li, Qiang
Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma
title Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma
title_full Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma
title_fullStr Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma
title_full_unstemmed Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma
title_short Molecular Characteristics, Prognostic Value, and Immune Characteristics of m(6)A Regulators Identified in Head and Neck Squamous Cell Carcinoma
title_sort molecular characteristics, prognostic value, and immune characteristics of m(6)a regulators identified in head and neck squamous cell carcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8014089/
https://www.ncbi.nlm.nih.gov/pubmed/33816266
http://dx.doi.org/10.3389/fonc.2021.629718
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