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Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry

[Image: see text] The quick and non-invasive evaluation of lignin from biomass has been the focus of much attention. Several types of spectroscopies, for example, near-infrared (NIR) and Fourier transform–Raman (FT–Raman), have been successfully applied to build quantitative predictive lignin models...

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Autores principales: Gao, Wenli, Shu, Ting, Liu, Qiang, Ling, Shengjie, Guan, Ying, Liu, Shengquan, Zhou, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8015071/
https://www.ncbi.nlm.nih.gov/pubmed/33817518
http://dx.doi.org/10.1021/acsomega.1c00400
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author Gao, Wenli
Shu, Ting
Liu, Qiang
Ling, Shengjie
Guan, Ying
Liu, Shengquan
Zhou, Liang
author_facet Gao, Wenli
Shu, Ting
Liu, Qiang
Ling, Shengjie
Guan, Ying
Liu, Shengquan
Zhou, Liang
author_sort Gao, Wenli
collection PubMed
description [Image: see text] The quick and non-invasive evaluation of lignin from biomass has been the focus of much attention. Several types of spectroscopies, for example, near-infrared (NIR) and Fourier transform–Raman (FT–Raman), have been successfully applied to build quantitative predictive lignin models based on chemometrics. However, due to the effect of sample moisture content and ambient humidity on its signals, NIR spectroscopy requires sophisticated pre-testing preparation. In addition, the current FT–Raman predictive models require large variations in the independent value inputs as restrictions in the corresponding mathematical algorithms prevent the effective biomass screening of suitable genotypes for lignin contents within a narrow range. In order to overcome the limitations associated with the current methods, in this paper, we employed Raman spectra excited using a 1064 nm laser, thus avoiding the impact of water and auto-fluorescence on NIR signals. The optimal baseline correction method, data type, mathematical algorithm, and internal reference were selected in order to build quantitative lignin models based on the data with limited variation. The resulting two predictive models, constructed through lasso and ridge regressions, respectively, proved to be effective in assessing the lignin content of poplar in large-scale breeding and genetic engineering programs.
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spelling pubmed-80150712021-04-02 Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry Gao, Wenli Shu, Ting Liu, Qiang Ling, Shengjie Guan, Ying Liu, Shengquan Zhou, Liang ACS Omega [Image: see text] The quick and non-invasive evaluation of lignin from biomass has been the focus of much attention. Several types of spectroscopies, for example, near-infrared (NIR) and Fourier transform–Raman (FT–Raman), have been successfully applied to build quantitative predictive lignin models based on chemometrics. However, due to the effect of sample moisture content and ambient humidity on its signals, NIR spectroscopy requires sophisticated pre-testing preparation. In addition, the current FT–Raman predictive models require large variations in the independent value inputs as restrictions in the corresponding mathematical algorithms prevent the effective biomass screening of suitable genotypes for lignin contents within a narrow range. In order to overcome the limitations associated with the current methods, in this paper, we employed Raman spectra excited using a 1064 nm laser, thus avoiding the impact of water and auto-fluorescence on NIR signals. The optimal baseline correction method, data type, mathematical algorithm, and internal reference were selected in order to build quantitative lignin models based on the data with limited variation. The resulting two predictive models, constructed through lasso and ridge regressions, respectively, proved to be effective in assessing the lignin content of poplar in large-scale breeding and genetic engineering programs. American Chemical Society 2021-03-18 /pmc/articles/PMC8015071/ /pubmed/33817518 http://dx.doi.org/10.1021/acsomega.1c00400 Text en © 2021 The Authors. Published by American Chemical Society Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Gao, Wenli
Shu, Ting
Liu, Qiang
Ling, Shengjie
Guan, Ying
Liu, Shengquan
Zhou, Liang
Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry
title Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry
title_full Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry
title_fullStr Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry
title_full_unstemmed Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry
title_short Predictive Modeling of Lignin Content for the Screening of Suitable Poplar Genotypes Based on Fourier Transform–Raman Spectrometry
title_sort predictive modeling of lignin content for the screening of suitable poplar genotypes based on fourier transform–raman spectrometry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8015071/
https://www.ncbi.nlm.nih.gov/pubmed/33817518
http://dx.doi.org/10.1021/acsomega.1c00400
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