Cargando…
Integrated analysis of cell shape and movement in moving frame
The cell's movement and morphological change are two interrelated cellular processes. An integrated analysis is needed to explore the relationship between them. However, it has been challenging to investigate them as a whole. The cell's trajectory can be described by its speed, curvature,...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Company of Biologists Ltd
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8015248/ https://www.ncbi.nlm.nih.gov/pubmed/33664097 http://dx.doi.org/10.1242/bio.058512 |
_version_ | 1783673642555539456 |
---|---|
author | Heryanto, Yusri Dwi Cheng, Chin-Yi Uchida, Yutaka Mimura, Kazushi Ishii, Masaru Yamada, Ryo |
author_facet | Heryanto, Yusri Dwi Cheng, Chin-Yi Uchida, Yutaka Mimura, Kazushi Ishii, Masaru Yamada, Ryo |
author_sort | Heryanto, Yusri Dwi |
collection | PubMed |
description | The cell's movement and morphological change are two interrelated cellular processes. An integrated analysis is needed to explore the relationship between them. However, it has been challenging to investigate them as a whole. The cell's trajectory can be described by its speed, curvature, and torsion. On the other hand, the three-dimensional (3D) cell shape can be studied by using a shape descriptor such as spherical harmonic (SH) descriptor, which is an extension of a Fourier transform in 3D space. We propose a novel method using parallel-transport (PT) to integrate these shape-movement data by using moving frames as the 3D-shape coordinate system. This moving frame is purely determined by the velocity vector. On this moving frame, the movement change will influence the coordinate system for shape analysis. By analyzing the change of the SH coefficients over time in the moving frame, we can observe the relationship between shape and movement. We illustrate the application of our approach using simulated and real datasets in this paper. |
format | Online Article Text |
id | pubmed-8015248 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | The Company of Biologists Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-80152482021-04-01 Integrated analysis of cell shape and movement in moving frame Heryanto, Yusri Dwi Cheng, Chin-Yi Uchida, Yutaka Mimura, Kazushi Ishii, Masaru Yamada, Ryo Biol Open Methods & Techniques The cell's movement and morphological change are two interrelated cellular processes. An integrated analysis is needed to explore the relationship between them. However, it has been challenging to investigate them as a whole. The cell's trajectory can be described by its speed, curvature, and torsion. On the other hand, the three-dimensional (3D) cell shape can be studied by using a shape descriptor such as spherical harmonic (SH) descriptor, which is an extension of a Fourier transform in 3D space. We propose a novel method using parallel-transport (PT) to integrate these shape-movement data by using moving frames as the 3D-shape coordinate system. This moving frame is purely determined by the velocity vector. On this moving frame, the movement change will influence the coordinate system for shape analysis. By analyzing the change of the SH coefficients over time in the moving frame, we can observe the relationship between shape and movement. We illustrate the application of our approach using simulated and real datasets in this paper. The Company of Biologists Ltd 2021-03-26 /pmc/articles/PMC8015248/ /pubmed/33664097 http://dx.doi.org/10.1242/bio.058512 Text en © 2021. Published by The Company of Biologists Ltd http://creativecommons.org/licenses/by/4.0This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Methods & Techniques Heryanto, Yusri Dwi Cheng, Chin-Yi Uchida, Yutaka Mimura, Kazushi Ishii, Masaru Yamada, Ryo Integrated analysis of cell shape and movement in moving frame |
title | Integrated analysis of cell shape and movement in moving frame |
title_full | Integrated analysis of cell shape and movement in moving frame |
title_fullStr | Integrated analysis of cell shape and movement in moving frame |
title_full_unstemmed | Integrated analysis of cell shape and movement in moving frame |
title_short | Integrated analysis of cell shape and movement in moving frame |
title_sort | integrated analysis of cell shape and movement in moving frame |
topic | Methods & Techniques |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8015248/ https://www.ncbi.nlm.nih.gov/pubmed/33664097 http://dx.doi.org/10.1242/bio.058512 |
work_keys_str_mv | AT heryantoyusridwi integratedanalysisofcellshapeandmovementinmovingframe AT chengchinyi integratedanalysisofcellshapeandmovementinmovingframe AT uchidayutaka integratedanalysisofcellshapeandmovementinmovingframe AT mimurakazushi integratedanalysisofcellshapeandmovementinmovingframe AT ishiimasaru integratedanalysisofcellshapeandmovementinmovingframe AT yamadaryo integratedanalysisofcellshapeandmovementinmovingframe |