RCSB Protein Data Bank 1D tools and services

MOTIVATION: Interoperability between polymer sequences and structural data is essential for providing a complete picture of protein and gene features and helping to understand biomolecular function. RESULTS: Herein, we present two resources designed to improve interoperability between the RCSB Prote...

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Detalles Bibliográficos
Autores principales: Segura, Joan, Rose, Yana, Westbrook, John, Burley, Stephen K, Duarte, Jose M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8016458/
https://www.ncbi.nlm.nih.gov/pubmed/33313665
http://dx.doi.org/10.1093/bioinformatics/btaa1012
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author Segura, Joan
Rose, Yana
Westbrook, John
Burley, Stephen K
Duarte, Jose M
author_facet Segura, Joan
Rose, Yana
Westbrook, John
Burley, Stephen K
Duarte, Jose M
author_sort Segura, Joan
collection PubMed
description MOTIVATION: Interoperability between polymer sequences and structural data is essential for providing a complete picture of protein and gene features and helping to understand biomolecular function. RESULTS: Herein, we present two resources designed to improve interoperability between the RCSB Protein Data Bank, the NCBI and the UniProtKB data resources and visualize integrated data therefrom. The underlying tools provide a flexible means of mapping between the different coordinate spaces and an interactive tool allows convenient visualization of the 1-dimensional data over the web. AVAILABILITYAND IMPLEMENTATION: https://1d-coordinates.rcsb.org and https://rcsb.github.io/rcsb-saguaro. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-80164582021-04-07 RCSB Protein Data Bank 1D tools and services Segura, Joan Rose, Yana Westbrook, John Burley, Stephen K Duarte, Jose M Bioinformatics Applications Notes MOTIVATION: Interoperability between polymer sequences and structural data is essential for providing a complete picture of protein and gene features and helping to understand biomolecular function. RESULTS: Herein, we present two resources designed to improve interoperability between the RCSB Protein Data Bank, the NCBI and the UniProtKB data resources and visualize integrated data therefrom. The underlying tools provide a flexible means of mapping between the different coordinate spaces and an interactive tool allows convenient visualization of the 1-dimensional data over the web. AVAILABILITYAND IMPLEMENTATION: https://1d-coordinates.rcsb.org and https://rcsb.github.io/rcsb-saguaro. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2020-12-27 /pmc/articles/PMC8016458/ /pubmed/33313665 http://dx.doi.org/10.1093/bioinformatics/btaa1012 Text en © The Author(s) 2020. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Segura, Joan
Rose, Yana
Westbrook, John
Burley, Stephen K
Duarte, Jose M
RCSB Protein Data Bank 1D tools and services
title RCSB Protein Data Bank 1D tools and services
title_full RCSB Protein Data Bank 1D tools and services
title_fullStr RCSB Protein Data Bank 1D tools and services
title_full_unstemmed RCSB Protein Data Bank 1D tools and services
title_short RCSB Protein Data Bank 1D tools and services
title_sort rcsb protein data bank 1d tools and services
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8016458/
https://www.ncbi.nlm.nih.gov/pubmed/33313665
http://dx.doi.org/10.1093/bioinformatics/btaa1012
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