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Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)

This research presents a reverse engineering approach to discover the patterns and evolution behavior of SARS-CoV-2 using AI and big data. Accordingly, we have studied five viral families (Orthomyxoviridae, Retroviridae, Filoviridae, Flaviviridae, and Coronaviridae) that happened in the era of the p...

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Autores principales: Haimed, Ahmad M. Abu, Saba, Tanzila, Albasha, Ayman, Rehman, Amjad, Kolivand, Mahyar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8016547/
https://www.ncbi.nlm.nih.gov/pubmed/33824882
http://dx.doi.org/10.1016/j.eti.2021.101531
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author Haimed, Ahmad M. Abu
Saba, Tanzila
Albasha, Ayman
Rehman, Amjad
Kolivand, Mahyar
author_facet Haimed, Ahmad M. Abu
Saba, Tanzila
Albasha, Ayman
Rehman, Amjad
Kolivand, Mahyar
author_sort Haimed, Ahmad M. Abu
collection PubMed
description This research presents a reverse engineering approach to discover the patterns and evolution behavior of SARS-CoV-2 using AI and big data. Accordingly, we have studied five viral families (Orthomyxoviridae, Retroviridae, Filoviridae, Flaviviridae, and Coronaviridae) that happened in the era of the past one hundred years. To capture the similarities, common characteristics, and evolution behavior for prediction concerning SARS-CoV-2. And how reverse engineering using Artificial intelligence (AI) and big data is efficient and provides wide horizons. The results show that SARS-CoV-2 shares the same highest active amino acids (S, L, and T) with the mentioned viral families. As known, that affects the building function of the proteins. We have also devised a mathematical formula representing how we calculate the evolution difference percentage between each virus concerning its phylogenic tree. It shows that SARS-CoV-2 has fast mutation evolution concerning its time of arising. Artificial Intelligence (AI) is used to predict the next evolved instance of SARS-CoV-2 by utilizing the phylogenic tree data as a corpus using Long Short-term Memory (LSTM). This paper has shown the evolved viral instance prediction process on ORF7a protein from SARS-CoV-2 as the first stage to predict the complete mutant virus. Finally, in this research, we have focused on analyzing the virus to its primary factors by reverse engineering using AI and big data to understand the viral similarities, patterns, and evolution behavior to predict future viral mutations of the virus artificially in a systematic and logical way.
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spelling pubmed-80165472021-04-02 Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM) Haimed, Ahmad M. Abu Saba, Tanzila Albasha, Ayman Rehman, Amjad Kolivand, Mahyar Environ Technol Innov Article This research presents a reverse engineering approach to discover the patterns and evolution behavior of SARS-CoV-2 using AI and big data. Accordingly, we have studied five viral families (Orthomyxoviridae, Retroviridae, Filoviridae, Flaviviridae, and Coronaviridae) that happened in the era of the past one hundred years. To capture the similarities, common characteristics, and evolution behavior for prediction concerning SARS-CoV-2. And how reverse engineering using Artificial intelligence (AI) and big data is efficient and provides wide horizons. The results show that SARS-CoV-2 shares the same highest active amino acids (S, L, and T) with the mentioned viral families. As known, that affects the building function of the proteins. We have also devised a mathematical formula representing how we calculate the evolution difference percentage between each virus concerning its phylogenic tree. It shows that SARS-CoV-2 has fast mutation evolution concerning its time of arising. Artificial Intelligence (AI) is used to predict the next evolved instance of SARS-CoV-2 by utilizing the phylogenic tree data as a corpus using Long Short-term Memory (LSTM). This paper has shown the evolved viral instance prediction process on ORF7a protein from SARS-CoV-2 as the first stage to predict the complete mutant virus. Finally, in this research, we have focused on analyzing the virus to its primary factors by reverse engineering using AI and big data to understand the viral similarities, patterns, and evolution behavior to predict future viral mutations of the virus artificially in a systematic and logical way. Elsevier B.V. 2021-05 2021-04-02 /pmc/articles/PMC8016547/ /pubmed/33824882 http://dx.doi.org/10.1016/j.eti.2021.101531 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Haimed, Ahmad M. Abu
Saba, Tanzila
Albasha, Ayman
Rehman, Amjad
Kolivand, Mahyar
Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)
title Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)
title_full Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)
title_fullStr Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)
title_full_unstemmed Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)
title_short Viral reverse engineering using Artificial Intelligence and big data COVID-19 infection with Long Short-term Memory (LSTM)
title_sort viral reverse engineering using artificial intelligence and big data covid-19 infection with long short-term memory (lstm)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8016547/
https://www.ncbi.nlm.nih.gov/pubmed/33824882
http://dx.doi.org/10.1016/j.eti.2021.101531
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