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Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration

Background: Hepatocellular carcinoma (HCC) is the most common histological type of liver cancer, with an unsatisfactory long-term survival rate. Despite immune checkpoint inhibitors for HCC have got glories in recent clinical trials, the relatively low response rate is still a thorny problem. Theref...

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Autores principales: Zou, Yiping, Chen, Zhihong, Han, Hongwei, Ruan, Shiye, Jin, Liang, Zhang, Yuanpeng, Chen, Zhengrong, Ma, Zuyi, Lou, Qi, Shi, Ning, Jin, Haosheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017194/
https://www.ncbi.nlm.nih.gov/pubmed/33816550
http://dx.doi.org/10.3389/fmolb.2021.602227
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author Zou, Yiping
Chen, Zhihong
Han, Hongwei
Ruan, Shiye
Jin, Liang
Zhang, Yuanpeng
Chen, Zhengrong
Ma, Zuyi
Lou, Qi
Shi, Ning
Jin, Haosheng
author_facet Zou, Yiping
Chen, Zhihong
Han, Hongwei
Ruan, Shiye
Jin, Liang
Zhang, Yuanpeng
Chen, Zhengrong
Ma, Zuyi
Lou, Qi
Shi, Ning
Jin, Haosheng
author_sort Zou, Yiping
collection PubMed
description Background: Hepatocellular carcinoma (HCC) is the most common histological type of liver cancer, with an unsatisfactory long-term survival rate. Despite immune checkpoint inhibitors for HCC have got glories in recent clinical trials, the relatively low response rate is still a thorny problem. Therefore, there is an urgent need to screen biomarkers of HCC to predict the prognosis and efficacy of immunotherapy. Methods: Gene expression profiles of HCC were retrieved from TCGA, GEO, and ICGC databases while the immune-related genes (IRGs) were retrieved from the ImmPort database. CIBERSORT and WGCNA algorithms were combined to identify the gene module most related to CD8(+) T cells in the GEO cohort. Subsequently, the genes in hub modules were subjected to univariate, LASSO, and multivariate Cox regression analyses in the TCGA cohort to develop a risk signature. Afterward, the accuracy of the risk signature was validated by the ICGC cohort, and its relationships with CD8(+) T cell infiltration and PDL1 expression were explored. Results: Nine IRGs were finally incorporated into a risk signature. Patients in the high-risk group had a poorer prognosis than those in the low-risk group. Confirmed by TCGA and ICGC cohorts, the risk signature possessed a relatively high accuracy. Additionally, the risk signature was demonstrated as an independent prognostic factor and closely related to the CD8(+) T cell infiltration and PDL1 expression. Conclusion: A risk signature was constructed to predict the prognosis of HCC patients and detect patients who may have a higher positive response rate to immune checkpoint inhibitors.
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spelling pubmed-80171942021-04-03 Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration Zou, Yiping Chen, Zhihong Han, Hongwei Ruan, Shiye Jin, Liang Zhang, Yuanpeng Chen, Zhengrong Ma, Zuyi Lou, Qi Shi, Ning Jin, Haosheng Front Mol Biosci Molecular Biosciences Background: Hepatocellular carcinoma (HCC) is the most common histological type of liver cancer, with an unsatisfactory long-term survival rate. Despite immune checkpoint inhibitors for HCC have got glories in recent clinical trials, the relatively low response rate is still a thorny problem. Therefore, there is an urgent need to screen biomarkers of HCC to predict the prognosis and efficacy of immunotherapy. Methods: Gene expression profiles of HCC were retrieved from TCGA, GEO, and ICGC databases while the immune-related genes (IRGs) were retrieved from the ImmPort database. CIBERSORT and WGCNA algorithms were combined to identify the gene module most related to CD8(+) T cells in the GEO cohort. Subsequently, the genes in hub modules were subjected to univariate, LASSO, and multivariate Cox regression analyses in the TCGA cohort to develop a risk signature. Afterward, the accuracy of the risk signature was validated by the ICGC cohort, and its relationships with CD8(+) T cell infiltration and PDL1 expression were explored. Results: Nine IRGs were finally incorporated into a risk signature. Patients in the high-risk group had a poorer prognosis than those in the low-risk group. Confirmed by TCGA and ICGC cohorts, the risk signature possessed a relatively high accuracy. Additionally, the risk signature was demonstrated as an independent prognostic factor and closely related to the CD8(+) T cell infiltration and PDL1 expression. Conclusion: A risk signature was constructed to predict the prognosis of HCC patients and detect patients who may have a higher positive response rate to immune checkpoint inhibitors. Frontiers Media S.A. 2021-03-19 /pmc/articles/PMC8017194/ /pubmed/33816550 http://dx.doi.org/10.3389/fmolb.2021.602227 Text en Copyright © 2021 Zou, Chen, Han, Ruan, Jin, Zhang, Chen, Ma, Lou, Shi and Jin. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Zou, Yiping
Chen, Zhihong
Han, Hongwei
Ruan, Shiye
Jin, Liang
Zhang, Yuanpeng
Chen, Zhengrong
Ma, Zuyi
Lou, Qi
Shi, Ning
Jin, Haosheng
Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration
title Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration
title_full Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration
title_fullStr Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration
title_full_unstemmed Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration
title_short Risk Signature Related to Immunotherapy Reaction of Hepatocellular Carcinoma Based on the Immune-Related Genes Associated With CD8(+) T Cell Infiltration
title_sort risk signature related to immunotherapy reaction of hepatocellular carcinoma based on the immune-related genes associated with cd8(+) t cell infiltration
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017194/
https://www.ncbi.nlm.nih.gov/pubmed/33816550
http://dx.doi.org/10.3389/fmolb.2021.602227
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