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A deep convolutional neural network for COVID-19 detection using chest X-rays

PURPOSE: We present image classifiers based on Dense Convolutional Networks and transfer learning to classify chest X-ray images according to three labels: COVID-19, pneumonia, and normal. METHODS: We fine-tuned neural networks pretrained on ImageNet and applied a twice transfer learning approach, u...

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Autores principales: Bassi, Pedro R. A. S., Attux, Romis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017520/
http://dx.doi.org/10.1007/s42600-021-00132-9
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author Bassi, Pedro R. A. S.
Attux, Romis
author_facet Bassi, Pedro R. A. S.
Attux, Romis
author_sort Bassi, Pedro R. A. S.
collection PubMed
description PURPOSE: We present image classifiers based on Dense Convolutional Networks and transfer learning to classify chest X-ray images according to three labels: COVID-19, pneumonia, and normal. METHODS: We fine-tuned neural networks pretrained on ImageNet and applied a twice transfer learning approach, using NIH ChestX-ray14 dataset as an intermediate step. We also suggested a novelty called output neuron keeping, which changes the twice transfer learning technique. In order to clarify the modus operandi of the models, we used Layer-wise Relevance Propagation (LRP) to generate heatmaps. RESULTS: We were able to reach test accuracy of 100% on our test dataset. Twice transfer learning and output neuron keeping showed promising results improving performances, mainly in the beginning of the training process. Although LRP revealed that words on the X-rays can influence the networks’ predictions, we discovered this had only a very small effect on accuracy. CONCLUSION: Although clinical studies and larger datasets are still needed to further ensure good generalization, the state-of-the-art performances we achieved show that, with the help of artificial intelligence, chest X-rays can become a cheap and accurate auxiliary method for COVID-19 diagnosis. Heatmaps generated by LRP improve the interpretability of the deep neural networks and indicate an analytical path for future research on diagnosis. Twice transfer learning with output neuron keeping improved DNN performance.
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spelling pubmed-80175202021-04-02 A deep convolutional neural network for COVID-19 detection using chest X-rays Bassi, Pedro R. A. S. Attux, Romis Res. Biomed. Eng. Original Article PURPOSE: We present image classifiers based on Dense Convolutional Networks and transfer learning to classify chest X-ray images according to three labels: COVID-19, pneumonia, and normal. METHODS: We fine-tuned neural networks pretrained on ImageNet and applied a twice transfer learning approach, using NIH ChestX-ray14 dataset as an intermediate step. We also suggested a novelty called output neuron keeping, which changes the twice transfer learning technique. In order to clarify the modus operandi of the models, we used Layer-wise Relevance Propagation (LRP) to generate heatmaps. RESULTS: We were able to reach test accuracy of 100% on our test dataset. Twice transfer learning and output neuron keeping showed promising results improving performances, mainly in the beginning of the training process. Although LRP revealed that words on the X-rays can influence the networks’ predictions, we discovered this had only a very small effect on accuracy. CONCLUSION: Although clinical studies and larger datasets are still needed to further ensure good generalization, the state-of-the-art performances we achieved show that, with the help of artificial intelligence, chest X-rays can become a cheap and accurate auxiliary method for COVID-19 diagnosis. Heatmaps generated by LRP improve the interpretability of the deep neural networks and indicate an analytical path for future research on diagnosis. Twice transfer learning with output neuron keeping improved DNN performance. Springer International Publishing 2021-04-02 2022 /pmc/articles/PMC8017520/ http://dx.doi.org/10.1007/s42600-021-00132-9 Text en © Sociedade Brasileira de Engenharia Biomedica 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Article
Bassi, Pedro R. A. S.
Attux, Romis
A deep convolutional neural network for COVID-19 detection using chest X-rays
title A deep convolutional neural network for COVID-19 detection using chest X-rays
title_full A deep convolutional neural network for COVID-19 detection using chest X-rays
title_fullStr A deep convolutional neural network for COVID-19 detection using chest X-rays
title_full_unstemmed A deep convolutional neural network for COVID-19 detection using chest X-rays
title_short A deep convolutional neural network for COVID-19 detection using chest X-rays
title_sort deep convolutional neural network for covid-19 detection using chest x-rays
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017520/
http://dx.doi.org/10.1007/s42600-021-00132-9
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