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Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images

Automatic diagnosis of coronavirus (COVID-19) is studied in this research. Deep learning methods especially convolutional neural networks (CNNs) have shown great success in COVID-19 diagnosis in recent works. But they are efficient when the depth of network is high enough. However, the use of a deep...

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Autor principal: Imani, Maryam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017558/
https://www.ncbi.nlm.nih.gov/pubmed/33824681
http://dx.doi.org/10.1016/j.bspc.2021.102602
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author Imani, Maryam
author_facet Imani, Maryam
author_sort Imani, Maryam
collection PubMed
description Automatic diagnosis of coronavirus (COVID-19) is studied in this research. Deep learning methods especially convolutional neural networks (CNNs) have shown great success in COVID-19 diagnosis in recent works. But they are efficient when the depth of network is high enough. However, the use of a deep network requires a sufficiently large training set, which is not available in practice. From the other hand, the use of a shallow CNN may not provide superior results because it is not able to rich feature extraction due to lacking enough convolutional layers. To deal with this difficulty, the contextual features reduced by convolutional filters (CFRCF) is proposed in this work. CFRCF extracts shape and textural features as contextual feature maps from the chest X-ray radiographs and abdominal computed tomography (CT) images. Morphological operators, Gabor filter banks and attribute filters are used for contextual feature extraction. Then, two convolutional filters are applied to the contextual feature cube to extract the nonlinear sub-features and hidden relationships among the contextual features. Finally, a fully connected layer is used to produce a reduced feature vector which is fed to a classifier. Support vector machine and random forest are used as classifier. The experimental results show the superior performance of the proposed method from the recognition accuracy and running time point of view using limited training samples. More than 76% and 94% overall classification accuracy is obtained by the proposed method in CT scan and X-ray images datasets, respectively.
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spelling pubmed-80175582021-04-02 Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images Imani, Maryam Biomed Signal Process Control Article Automatic diagnosis of coronavirus (COVID-19) is studied in this research. Deep learning methods especially convolutional neural networks (CNNs) have shown great success in COVID-19 diagnosis in recent works. But they are efficient when the depth of network is high enough. However, the use of a deep network requires a sufficiently large training set, which is not available in practice. From the other hand, the use of a shallow CNN may not provide superior results because it is not able to rich feature extraction due to lacking enough convolutional layers. To deal with this difficulty, the contextual features reduced by convolutional filters (CFRCF) is proposed in this work. CFRCF extracts shape and textural features as contextual feature maps from the chest X-ray radiographs and abdominal computed tomography (CT) images. Morphological operators, Gabor filter banks and attribute filters are used for contextual feature extraction. Then, two convolutional filters are applied to the contextual feature cube to extract the nonlinear sub-features and hidden relationships among the contextual features. Finally, a fully connected layer is used to produce a reduced feature vector which is fed to a classifier. Support vector machine and random forest are used as classifier. The experimental results show the superior performance of the proposed method from the recognition accuracy and running time point of view using limited training samples. More than 76% and 94% overall classification accuracy is obtained by the proposed method in CT scan and X-ray images datasets, respectively. Elsevier Ltd. 2021-07 2021-04-02 /pmc/articles/PMC8017558/ /pubmed/33824681 http://dx.doi.org/10.1016/j.bspc.2021.102602 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Imani, Maryam
Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images
title Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images
title_full Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images
title_fullStr Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images
title_full_unstemmed Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images
title_short Automatic diagnosis of coronavirus (COVID-19) using shape and texture characteristics extracted from X-Ray and CT-Scan images
title_sort automatic diagnosis of coronavirus (covid-19) using shape and texture characteristics extracted from x-ray and ct-scan images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017558/
https://www.ncbi.nlm.nih.gov/pubmed/33824681
http://dx.doi.org/10.1016/j.bspc.2021.102602
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