Cargando…

Estimating computational limits on theoretical descriptions of biological cells

There has been much success recently in theoretically simulating parts of complex biological systems on the molecular level, with the goal of first-principles modeling of whole cells. However, there is the question of whether such simulations can be performed because of the enormous complexity of ce...

Descripción completa

Detalles Bibliográficos
Autores principales: Netz, Roland R., Eaton, William A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017709/
https://www.ncbi.nlm.nih.gov/pubmed/33495364
http://dx.doi.org/10.1073/pnas.2022753118
_version_ 1783674101761572864
author Netz, Roland R.
Eaton, William A.
author_facet Netz, Roland R.
Eaton, William A.
author_sort Netz, Roland R.
collection PubMed
description There has been much success recently in theoretically simulating parts of complex biological systems on the molecular level, with the goal of first-principles modeling of whole cells. However, there is the question of whether such simulations can be performed because of the enormous complexity of cells. We establish approximate equations to estimate computation times required to simulate highly simplified models of cells by either molecular dynamics calculations or by solving molecular kinetic equations. Our equations place limits on the complexity of cells that can be theoretically understood with these two methods and provide a first step in developing what can be considered biological uncertainty relations for molecular models of cells. While a molecular kinetics description of the genetically simplest bacterial cell may indeed soon be possible, neither theoretical description for a multicellular system, such as the human brain, will be possible for many decades and may never be possible even with quantum computing.
format Online
Article
Text
id pubmed-8017709
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher National Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-80177092021-04-12 Estimating computational limits on theoretical descriptions of biological cells Netz, Roland R. Eaton, William A. Proc Natl Acad Sci U S A Biological Sciences There has been much success recently in theoretically simulating parts of complex biological systems on the molecular level, with the goal of first-principles modeling of whole cells. However, there is the question of whether such simulations can be performed because of the enormous complexity of cells. We establish approximate equations to estimate computation times required to simulate highly simplified models of cells by either molecular dynamics calculations or by solving molecular kinetic equations. Our equations place limits on the complexity of cells that can be theoretically understood with these two methods and provide a first step in developing what can be considered biological uncertainty relations for molecular models of cells. While a molecular kinetics description of the genetically simplest bacterial cell may indeed soon be possible, neither theoretical description for a multicellular system, such as the human brain, will be possible for many decades and may never be possible even with quantum computing. National Academy of Sciences 2021-02-09 2021-01-25 /pmc/articles/PMC8017709/ /pubmed/33495364 http://dx.doi.org/10.1073/pnas.2022753118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Biological Sciences
Netz, Roland R.
Eaton, William A.
Estimating computational limits on theoretical descriptions of biological cells
title Estimating computational limits on theoretical descriptions of biological cells
title_full Estimating computational limits on theoretical descriptions of biological cells
title_fullStr Estimating computational limits on theoretical descriptions of biological cells
title_full_unstemmed Estimating computational limits on theoretical descriptions of biological cells
title_short Estimating computational limits on theoretical descriptions of biological cells
title_sort estimating computational limits on theoretical descriptions of biological cells
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017709/
https://www.ncbi.nlm.nih.gov/pubmed/33495364
http://dx.doi.org/10.1073/pnas.2022753118
work_keys_str_mv AT netzrolandr estimatingcomputationallimitsontheoreticaldescriptionsofbiologicalcells
AT eatonwilliama estimatingcomputationallimitsontheoreticaldescriptionsofbiologicalcells