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Estimating computational limits on theoretical descriptions of biological cells
There has been much success recently in theoretically simulating parts of complex biological systems on the molecular level, with the goal of first-principles modeling of whole cells. However, there is the question of whether such simulations can be performed because of the enormous complexity of ce...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017709/ https://www.ncbi.nlm.nih.gov/pubmed/33495364 http://dx.doi.org/10.1073/pnas.2022753118 |
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author | Netz, Roland R. Eaton, William A. |
author_facet | Netz, Roland R. Eaton, William A. |
author_sort | Netz, Roland R. |
collection | PubMed |
description | There has been much success recently in theoretically simulating parts of complex biological systems on the molecular level, with the goal of first-principles modeling of whole cells. However, there is the question of whether such simulations can be performed because of the enormous complexity of cells. We establish approximate equations to estimate computation times required to simulate highly simplified models of cells by either molecular dynamics calculations or by solving molecular kinetic equations. Our equations place limits on the complexity of cells that can be theoretically understood with these two methods and provide a first step in developing what can be considered biological uncertainty relations for molecular models of cells. While a molecular kinetics description of the genetically simplest bacterial cell may indeed soon be possible, neither theoretical description for a multicellular system, such as the human brain, will be possible for many decades and may never be possible even with quantum computing. |
format | Online Article Text |
id | pubmed-8017709 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-80177092021-04-12 Estimating computational limits on theoretical descriptions of biological cells Netz, Roland R. Eaton, William A. Proc Natl Acad Sci U S A Biological Sciences There has been much success recently in theoretically simulating parts of complex biological systems on the molecular level, with the goal of first-principles modeling of whole cells. However, there is the question of whether such simulations can be performed because of the enormous complexity of cells. We establish approximate equations to estimate computation times required to simulate highly simplified models of cells by either molecular dynamics calculations or by solving molecular kinetic equations. Our equations place limits on the complexity of cells that can be theoretically understood with these two methods and provide a first step in developing what can be considered biological uncertainty relations for molecular models of cells. While a molecular kinetics description of the genetically simplest bacterial cell may indeed soon be possible, neither theoretical description for a multicellular system, such as the human brain, will be possible for many decades and may never be possible even with quantum computing. National Academy of Sciences 2021-02-09 2021-01-25 /pmc/articles/PMC8017709/ /pubmed/33495364 http://dx.doi.org/10.1073/pnas.2022753118 Text en Copyright © 2021 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Biological Sciences Netz, Roland R. Eaton, William A. Estimating computational limits on theoretical descriptions of biological cells |
title | Estimating computational limits on theoretical descriptions of biological cells |
title_full | Estimating computational limits on theoretical descriptions of biological cells |
title_fullStr | Estimating computational limits on theoretical descriptions of biological cells |
title_full_unstemmed | Estimating computational limits on theoretical descriptions of biological cells |
title_short | Estimating computational limits on theoretical descriptions of biological cells |
title_sort | estimating computational limits on theoretical descriptions of biological cells |
topic | Biological Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8017709/ https://www.ncbi.nlm.nih.gov/pubmed/33495364 http://dx.doi.org/10.1073/pnas.2022753118 |
work_keys_str_mv | AT netzrolandr estimatingcomputationallimitsontheoreticaldescriptionsofbiologicalcells AT eatonwilliama estimatingcomputationallimitsontheoreticaldescriptionsofbiologicalcells |