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COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
OBJECTIVE: Lung cancer (LC) is one of the top ten malignant tumors and the first leading cause of cancer-related death among both men and women worldwide. It is imperative to identify immune-related biomarkers for early LC diagnosis and treatment. METHODS: Three Gene Expression Omnibus (GEO) dataset...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8018245/ https://www.ncbi.nlm.nih.gov/pubmed/33850663 http://dx.doi.org/10.7717/peerj.11145 |
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author | Geng, Qishun Shen, Zhibo Li, Lifeng Zhao, Jie |
author_facet | Geng, Qishun Shen, Zhibo Li, Lifeng Zhao, Jie |
author_sort | Geng, Qishun |
collection | PubMed |
description | OBJECTIVE: Lung cancer (LC) is one of the top ten malignant tumors and the first leading cause of cancer-related death among both men and women worldwide. It is imperative to identify immune-related biomarkers for early LC diagnosis and treatment. METHODS: Three Gene Expression Omnibus (GEO) datasets were selected to acquire the differentially expressed genes(DEGs) between LC and normal lung samples through GEO2R tools of NCBI. To identify hub genes, the DEGs were performed functional enrichment analysis, the protein–protein interaction (PPI) network construction, and Lasso regression. Then, a nomogram was constructed to predict the prognosis of patients with carcinoma based on hub genes. We further evaluated the influence of COL1A1 on clinical prognosis using GSE3141, GSE31210, and TCGA database. Also, the correlations between COL1A1 and cancer immune infiltrates and the B7-CD28 family was investigated via TIMER and GEPIA. Further analysis of immunohistochemistry shown that the COL1A1 expression level is positively correlated with CD276 expression level. RESULTS: By difference analysis, there were 340 DEGs between LC and normal lung samples. Then, we picked out seven hub genes, which were identified as components of the risk signature to divide LC into low and high-risk groups. Among them, the expression of COL1A1 is highly correlated with overall survival(OS) and progression-free survival (PFS) (p < 0.05). Importantly, there is a moderate to strong positive relationships between COL1A1 expression level and infiltration level of CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level. CONCLUSION: These findings suggest that COL1A1 is correlated with prognosis and immune infiltrating levels, including CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level, indicating COL1A1 can be a potential immunity-related biomarker and therapeutic target in LC. |
format | Online Article Text |
id | pubmed-8018245 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-80182452021-04-12 COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer Geng, Qishun Shen, Zhibo Li, Lifeng Zhao, Jie PeerJ Bioinformatics OBJECTIVE: Lung cancer (LC) is one of the top ten malignant tumors and the first leading cause of cancer-related death among both men and women worldwide. It is imperative to identify immune-related biomarkers for early LC diagnosis and treatment. METHODS: Three Gene Expression Omnibus (GEO) datasets were selected to acquire the differentially expressed genes(DEGs) between LC and normal lung samples through GEO2R tools of NCBI. To identify hub genes, the DEGs were performed functional enrichment analysis, the protein–protein interaction (PPI) network construction, and Lasso regression. Then, a nomogram was constructed to predict the prognosis of patients with carcinoma based on hub genes. We further evaluated the influence of COL1A1 on clinical prognosis using GSE3141, GSE31210, and TCGA database. Also, the correlations between COL1A1 and cancer immune infiltrates and the B7-CD28 family was investigated via TIMER and GEPIA. Further analysis of immunohistochemistry shown that the COL1A1 expression level is positively correlated with CD276 expression level. RESULTS: By difference analysis, there were 340 DEGs between LC and normal lung samples. Then, we picked out seven hub genes, which were identified as components of the risk signature to divide LC into low and high-risk groups. Among them, the expression of COL1A1 is highly correlated with overall survival(OS) and progression-free survival (PFS) (p < 0.05). Importantly, there is a moderate to strong positive relationships between COL1A1 expression level and infiltration level of CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level. CONCLUSION: These findings suggest that COL1A1 is correlated with prognosis and immune infiltrating levels, including CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level, indicating COL1A1 can be a potential immunity-related biomarker and therapeutic target in LC. PeerJ Inc. 2021-03-30 /pmc/articles/PMC8018245/ /pubmed/33850663 http://dx.doi.org/10.7717/peerj.11145 Text en ©2021 Geng et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Geng, Qishun Shen, Zhibo Li, Lifeng Zhao, Jie COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
title | COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
title_full | COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
title_fullStr | COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
title_full_unstemmed | COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
title_short | COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
title_sort | col1a1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8018245/ https://www.ncbi.nlm.nih.gov/pubmed/33850663 http://dx.doi.org/10.7717/peerj.11145 |
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