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COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer

OBJECTIVE: Lung cancer (LC) is one of the top ten malignant tumors and the first leading cause of cancer-related death among both men and women worldwide. It is imperative to identify immune-related biomarkers for early LC diagnosis and treatment. METHODS: Three Gene Expression Omnibus (GEO) dataset...

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Autores principales: Geng, Qishun, Shen, Zhibo, Li, Lifeng, Zhao, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8018245/
https://www.ncbi.nlm.nih.gov/pubmed/33850663
http://dx.doi.org/10.7717/peerj.11145
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author Geng, Qishun
Shen, Zhibo
Li, Lifeng
Zhao, Jie
author_facet Geng, Qishun
Shen, Zhibo
Li, Lifeng
Zhao, Jie
author_sort Geng, Qishun
collection PubMed
description OBJECTIVE: Lung cancer (LC) is one of the top ten malignant tumors and the first leading cause of cancer-related death among both men and women worldwide. It is imperative to identify immune-related biomarkers for early LC diagnosis and treatment. METHODS: Three Gene Expression Omnibus (GEO) datasets were selected to acquire the differentially expressed genes(DEGs) between LC and normal lung samples through GEO2R tools of NCBI. To identify hub genes, the DEGs were performed functional enrichment analysis, the protein–protein interaction (PPI) network construction, and Lasso regression. Then, a nomogram was constructed to predict the prognosis of patients with carcinoma based on hub genes. We further evaluated the influence of COL1A1 on clinical prognosis using GSE3141, GSE31210, and TCGA database. Also, the correlations between COL1A1 and cancer immune infiltrates and the B7-CD28 family was investigated via TIMER and GEPIA. Further analysis of immunohistochemistry shown that the COL1A1 expression level is positively correlated with CD276 expression level. RESULTS: By difference analysis, there were 340 DEGs between LC and normal lung samples. Then, we picked out seven hub genes, which were identified as components of the risk signature to divide LC into low and high-risk groups. Among them, the expression of COL1A1 is highly correlated with overall survival(OS) and progression-free survival (PFS) (p < 0.05). Importantly, there is a moderate to strong positive relationships between COL1A1 expression level and infiltration level of CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level. CONCLUSION: These findings suggest that COL1A1 is correlated with prognosis and immune infiltrating levels, including CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level, indicating COL1A1 can be a potential immunity-related biomarker and therapeutic target in LC.
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spelling pubmed-80182452021-04-12 COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer Geng, Qishun Shen, Zhibo Li, Lifeng Zhao, Jie PeerJ Bioinformatics OBJECTIVE: Lung cancer (LC) is one of the top ten malignant tumors and the first leading cause of cancer-related death among both men and women worldwide. It is imperative to identify immune-related biomarkers for early LC diagnosis and treatment. METHODS: Three Gene Expression Omnibus (GEO) datasets were selected to acquire the differentially expressed genes(DEGs) between LC and normal lung samples through GEO2R tools of NCBI. To identify hub genes, the DEGs were performed functional enrichment analysis, the protein–protein interaction (PPI) network construction, and Lasso regression. Then, a nomogram was constructed to predict the prognosis of patients with carcinoma based on hub genes. We further evaluated the influence of COL1A1 on clinical prognosis using GSE3141, GSE31210, and TCGA database. Also, the correlations between COL1A1 and cancer immune infiltrates and the B7-CD28 family was investigated via TIMER and GEPIA. Further analysis of immunohistochemistry shown that the COL1A1 expression level is positively correlated with CD276 expression level. RESULTS: By difference analysis, there were 340 DEGs between LC and normal lung samples. Then, we picked out seven hub genes, which were identified as components of the risk signature to divide LC into low and high-risk groups. Among them, the expression of COL1A1 is highly correlated with overall survival(OS) and progression-free survival (PFS) (p < 0.05). Importantly, there is a moderate to strong positive relationships between COL1A1 expression level and infiltration level of CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level. CONCLUSION: These findings suggest that COL1A1 is correlated with prognosis and immune infiltrating levels, including CD4+ T cells, Macrophage, Neutrophil, and Dendritic cell, as well as CD276 expression level, indicating COL1A1 can be a potential immunity-related biomarker and therapeutic target in LC. PeerJ Inc. 2021-03-30 /pmc/articles/PMC8018245/ /pubmed/33850663 http://dx.doi.org/10.7717/peerj.11145 Text en ©2021 Geng et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Geng, Qishun
Shen, Zhibo
Li, Lifeng
Zhao, Jie
COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
title COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
title_full COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
title_fullStr COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
title_full_unstemmed COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
title_short COL1A1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
title_sort col1a1 is a prognostic biomarker and correlated with immune infiltrates in lung cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8018245/
https://www.ncbi.nlm.nih.gov/pubmed/33850663
http://dx.doi.org/10.7717/peerj.11145
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