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Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition
OBJECTIVES: To develop and evaluate an automated method for prostate T2-weighted (T2W) image normalization using dual-reference (fat and muscle) tissue. MATERIALS AND METHODS: Transverse T2W images from the publicly available PROMISE12 (N = 80) and PROSTATEx (N = 202) challenge datasets, and an in-h...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8018925/ https://www.ncbi.nlm.nih.gov/pubmed/32737628 http://dx.doi.org/10.1007/s10334-020-00871-3 |
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author | Sunoqrot, Mohammed R. S. Nketiah, Gabriel A. Selnæs, Kirsten M. Bathen, Tone F. Elschot, Mattijs |
author_facet | Sunoqrot, Mohammed R. S. Nketiah, Gabriel A. Selnæs, Kirsten M. Bathen, Tone F. Elschot, Mattijs |
author_sort | Sunoqrot, Mohammed R. S. |
collection | PubMed |
description | OBJECTIVES: To develop and evaluate an automated method for prostate T2-weighted (T2W) image normalization using dual-reference (fat and muscle) tissue. MATERIALS AND METHODS: Transverse T2W images from the publicly available PROMISE12 (N = 80) and PROSTATEx (N = 202) challenge datasets, and an in-house collected dataset (N = 60) were used. Aggregate channel features object detectors were trained to detect reference fat and muscle tissue regions, which were processed and utilized to normalize the 3D images by linear scaling. Mean prostate pseudo T2 values after normalization were compared to literature values. Inter-patient histogram intersections of voxel intensities in the prostate were compared between our approach, the original images, and other commonly used normalization methods. Healthy vs. malignant tissue classification performance was compared before and after normalization. RESULTS: The prostate pseudo T2 values of the three tested datasets (mean ± standard deviation = 78.49 ± 9.42, 79.69 ± 6.34 and 79.29 ± 6.30 ms) corresponded well to T2 values from literature (80 ± 34 ms). Our normalization approach resulted in significantly higher (p < 0.001) inter-patient histogram intersections (median = 0.746) than the original images (median = 0.417) and most other normalization methods. Healthy vs. malignant classification also improved significantly (p < 0.001) in peripheral (AUC 0.826 vs. 0.769) and transition (AUC 0.743 vs. 0.678) zones. CONCLUSION: An automated dual-reference tissue normalization of T2W images could help improve the quantitative assessment of prostate cancer. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10334-020-00871-3) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-8018925 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-80189252021-04-16 Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition Sunoqrot, Mohammed R. S. Nketiah, Gabriel A. Selnæs, Kirsten M. Bathen, Tone F. Elschot, Mattijs MAGMA Research Article OBJECTIVES: To develop and evaluate an automated method for prostate T2-weighted (T2W) image normalization using dual-reference (fat and muscle) tissue. MATERIALS AND METHODS: Transverse T2W images from the publicly available PROMISE12 (N = 80) and PROSTATEx (N = 202) challenge datasets, and an in-house collected dataset (N = 60) were used. Aggregate channel features object detectors were trained to detect reference fat and muscle tissue regions, which were processed and utilized to normalize the 3D images by linear scaling. Mean prostate pseudo T2 values after normalization were compared to literature values. Inter-patient histogram intersections of voxel intensities in the prostate were compared between our approach, the original images, and other commonly used normalization methods. Healthy vs. malignant tissue classification performance was compared before and after normalization. RESULTS: The prostate pseudo T2 values of the three tested datasets (mean ± standard deviation = 78.49 ± 9.42, 79.69 ± 6.34 and 79.29 ± 6.30 ms) corresponded well to T2 values from literature (80 ± 34 ms). Our normalization approach resulted in significantly higher (p < 0.001) inter-patient histogram intersections (median = 0.746) than the original images (median = 0.417) and most other normalization methods. Healthy vs. malignant classification also improved significantly (p < 0.001) in peripheral (AUC 0.826 vs. 0.769) and transition (AUC 0.743 vs. 0.678) zones. CONCLUSION: An automated dual-reference tissue normalization of T2W images could help improve the quantitative assessment of prostate cancer. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10334-020-00871-3) contains supplementary material, which is available to authorized users. Springer International Publishing 2020-07-31 2021 /pmc/articles/PMC8018925/ /pubmed/32737628 http://dx.doi.org/10.1007/s10334-020-00871-3 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Research Article Sunoqrot, Mohammed R. S. Nketiah, Gabriel A. Selnæs, Kirsten M. Bathen, Tone F. Elschot, Mattijs Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition |
title | Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition |
title_full | Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition |
title_fullStr | Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition |
title_full_unstemmed | Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition |
title_short | Automated reference tissue normalization of T2-weighted MR images of the prostate using object recognition |
title_sort | automated reference tissue normalization of t2-weighted mr images of the prostate using object recognition |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8018925/ https://www.ncbi.nlm.nih.gov/pubmed/32737628 http://dx.doi.org/10.1007/s10334-020-00871-3 |
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