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Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets

Diverse populations of natural killer (NK) cells have been identified in circulating peripheral blood and a wide variety of different tissues and organs. These tissue-resident NK cell populations are phenotypically distinct from circulating NK cells, however, functional descriptions of their roles w...

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Autores principales: Jameson, Gráinne, Robinson, Mark W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8019706/
https://www.ncbi.nlm.nih.gov/pubmed/33828559
http://dx.doi.org/10.3389/fimmu.2021.649311
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author Jameson, Gráinne
Robinson, Mark W.
author_facet Jameson, Gráinne
Robinson, Mark W.
author_sort Jameson, Gráinne
collection PubMed
description Diverse populations of natural killer (NK) cells have been identified in circulating peripheral blood and a wide variety of different tissues and organs. These tissue-resident NK cell populations are phenotypically distinct from circulating NK cells, however, functional descriptions of their roles within tissues are lacking. Recent advances in single cell RNA sequencing (scRNA-seq) have enabled detailed transcriptional profiling of tissues at the level of single cells and provide the opportunity to explore NK cell diversity within tissues. This review explores potential novel functions of human liver-resident (lr)NK cells identified in human liver scRNA-seq studies. By comparing these datasets we identified up-regulated and down-regulated genes associated with lrNK cells clusters. These genes encode a number of activating and inhibiting receptors, as well as signal transduction molecules, which highlight potential unique pathways that lrNK cells utilize to respond to stimuli within the human liver. This unique receptor repertoire of lrNK cells may confer the ability to regulate a number of immune cell populations, such as circulating monocytes and T cells, while avoiding activation by liver hepatocytes and Kupffer cells. Validating the expression of these receptors on lrNK cells and the proposed cellular interactions within the human liver will expand our understanding of the liver-specific homeostatic roles of this tissue-resident immune cell population.
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spelling pubmed-80197062021-04-06 Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets Jameson, Gráinne Robinson, Mark W. Front Immunol Immunology Diverse populations of natural killer (NK) cells have been identified in circulating peripheral blood and a wide variety of different tissues and organs. These tissue-resident NK cell populations are phenotypically distinct from circulating NK cells, however, functional descriptions of their roles within tissues are lacking. Recent advances in single cell RNA sequencing (scRNA-seq) have enabled detailed transcriptional profiling of tissues at the level of single cells and provide the opportunity to explore NK cell diversity within tissues. This review explores potential novel functions of human liver-resident (lr)NK cells identified in human liver scRNA-seq studies. By comparing these datasets we identified up-regulated and down-regulated genes associated with lrNK cells clusters. These genes encode a number of activating and inhibiting receptors, as well as signal transduction molecules, which highlight potential unique pathways that lrNK cells utilize to respond to stimuli within the human liver. This unique receptor repertoire of lrNK cells may confer the ability to regulate a number of immune cell populations, such as circulating monocytes and T cells, while avoiding activation by liver hepatocytes and Kupffer cells. Validating the expression of these receptors on lrNK cells and the proposed cellular interactions within the human liver will expand our understanding of the liver-specific homeostatic roles of this tissue-resident immune cell population. Frontiers Media S.A. 2021-03-22 /pmc/articles/PMC8019706/ /pubmed/33828559 http://dx.doi.org/10.3389/fimmu.2021.649311 Text en Copyright © 2021 Jameson and Robinson. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Jameson, Gráinne
Robinson, Mark W.
Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets
title Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets
title_full Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets
title_fullStr Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets
title_full_unstemmed Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets
title_short Insights Into Human Intrahepatic NK Cell Function From Single Cell RNA Sequencing Datasets
title_sort insights into human intrahepatic nk cell function from single cell rna sequencing datasets
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8019706/
https://www.ncbi.nlm.nih.gov/pubmed/33828559
http://dx.doi.org/10.3389/fimmu.2021.649311
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AT robinsonmarkw insightsintohumanintrahepaticnkcellfunctionfromsinglecellrnasequencingdatasets