Cargando…
To denoise or to cluster, that is not the question: optimizing pipelines for COI metabarcoding and metaphylogeography
BACKGROUND: The recent blooming of metabarcoding applications to biodiversity studies comes with some relevant methodological debates. One such issue concerns the treatment of reads by denoising or by clustering methods, which have been wrongly presented as alternatives. It has also been suggested t...
Autores principales: | Antich, Adrià, Palacin, Creu, Wangensteen, Owen S., Turon, Xavier |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020537/ https://www.ncbi.nlm.nih.gov/pubmed/33820526 http://dx.doi.org/10.1186/s12859-021-04115-6 |
Ejemplares similares
-
From metabarcoding to metaphylogeography: separating the wheat from the chaff
por: Turon, Xavier, et al.
Publicado: (2019) -
DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets
por: Antich, Adrià, et al.
Publicado: (2022) -
DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers
por: Wangensteen, Owen S., et al.
Publicado: (2018) -
Natural or Naturalized? Phylogeography Suggests That the Abundant Sea Urchin Arbacia lixula Is a Recent Colonizer of the Mediterranean
por: Wangensteen, Owen S., et al.
Publicado: (2012) -
Community assembly and metaphylogeography of soil biodiversity: Insights from haplotype‐level community DNA metabarcoding within an oceanic island
por: Andújar, Carmelo, et al.
Publicado: (2022)