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A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters

Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where rel...

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Autores principales: Jégousse, Clara, Vannier, Pauline, Groben, René, Glöckner, Frank Oliver, Marteinsson, Viggó
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020865/
https://www.ncbi.nlm.nih.gov/pubmed/33859876
http://dx.doi.org/10.7717/peerj.11112
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author Jégousse, Clara
Vannier, Pauline
Groben, René
Glöckner, Frank Oliver
Marteinsson, Viggó
author_facet Jégousse, Clara
Vannier, Pauline
Groben, René
Glöckner, Frank Oliver
Marteinsson, Viggó
author_sort Jégousse, Clara
collection PubMed
description Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome.
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spelling pubmed-80208652021-04-14 A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters Jégousse, Clara Vannier, Pauline Groben, René Glöckner, Frank Oliver Marteinsson, Viggó PeerJ Marine Biology Marine microorganisms contribute to the health of the global ocean by supporting the marine food web and regulating biogeochemical cycles. Assessing marine microbial diversity is a crucial step towards understanding the global ocean. The waters surrounding Iceland are a complex environment where relatively warm salty waters from the Atlantic cool down and sink down to the deep. Microbial studies in this area have focused on photosynthetic micro- and nanoplankton mainly using microscopy and chlorophyll measurements. However, the diversity and function of the bacterial and archaeal picoplankton remains unknown. Here, we used a co-assembly approach supported by a marine mock community to reconstruct metagenome-assembled genomes (MAGs) from 31 metagenomes from the sea surface and seafloor of four oceanographic sampling stations sampled between 2015 and 2018. The resulting 219 MAGs include 191 bacterial, 26 archaeal and two eukaryotic MAGs to bridge the gap in our current knowledge of the global marine microbiome. PeerJ Inc. 2021-04-02 /pmc/articles/PMC8020865/ /pubmed/33859876 http://dx.doi.org/10.7717/peerj.11112 Text en ©2021 Jégousse et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Marine Biology
Jégousse, Clara
Vannier, Pauline
Groben, René
Glöckner, Frank Oliver
Marteinsson, Viggó
A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_full A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_fullStr A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_full_unstemmed A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_short A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
title_sort total of 219 metagenome-assembled genomes of microorganisms from icelandic marine waters
topic Marine Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8020865/
https://www.ncbi.nlm.nih.gov/pubmed/33859876
http://dx.doi.org/10.7717/peerj.11112
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