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Deep learning classification of lipid droplets in quantitative phase images
We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperf...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8021159/ https://www.ncbi.nlm.nih.gov/pubmed/33819277 http://dx.doi.org/10.1371/journal.pone.0249196 |
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author | Sheneman, Luke Stephanopoulos, Gregory Vasdekis, Andreas E. |
author_facet | Sheneman, Luke Stephanopoulos, Gregory Vasdekis, Andreas E. |
author_sort | Sheneman, Luke |
collection | PubMed |
description | We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperform others, both quantitatively and qualitatively. We describe our imaging approach, all implemented machine learning methods, and their performance with respect to computational efficiency, required training resources, and relative method performance measured across multiple metrics. Overall, our results indicate that quantitative-phase imaging coupled to machine learning enables accurate lipid droplet classification in single living cells. As such, the present paradigm presents an excellent alternative of the more common fluorescent and Raman imaging modalities by enabling label-free, ultra-low phototoxicity, and deeper insight into the thermodynamics of metabolism of single cells. |
format | Online Article Text |
id | pubmed-8021159 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-80211592021-04-14 Deep learning classification of lipid droplets in quantitative phase images Sheneman, Luke Stephanopoulos, Gregory Vasdekis, Andreas E. PLoS One Research Article We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperform others, both quantitatively and qualitatively. We describe our imaging approach, all implemented machine learning methods, and their performance with respect to computational efficiency, required training resources, and relative method performance measured across multiple metrics. Overall, our results indicate that quantitative-phase imaging coupled to machine learning enables accurate lipid droplet classification in single living cells. As such, the present paradigm presents an excellent alternative of the more common fluorescent and Raman imaging modalities by enabling label-free, ultra-low phototoxicity, and deeper insight into the thermodynamics of metabolism of single cells. Public Library of Science 2021-04-05 /pmc/articles/PMC8021159/ /pubmed/33819277 http://dx.doi.org/10.1371/journal.pone.0249196 Text en © 2021 Luke et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Sheneman, Luke Stephanopoulos, Gregory Vasdekis, Andreas E. Deep learning classification of lipid droplets in quantitative phase images |
title | Deep learning classification of lipid droplets in quantitative phase images |
title_full | Deep learning classification of lipid droplets in quantitative phase images |
title_fullStr | Deep learning classification of lipid droplets in quantitative phase images |
title_full_unstemmed | Deep learning classification of lipid droplets in quantitative phase images |
title_short | Deep learning classification of lipid droplets in quantitative phase images |
title_sort | deep learning classification of lipid droplets in quantitative phase images |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8021159/ https://www.ncbi.nlm.nih.gov/pubmed/33819277 http://dx.doi.org/10.1371/journal.pone.0249196 |
work_keys_str_mv | AT shenemanluke deeplearningclassificationoflipiddropletsinquantitativephaseimages AT stephanopoulosgregory deeplearningclassificationoflipiddropletsinquantitativephaseimages AT vasdekisandrease deeplearningclassificationoflipiddropletsinquantitativephaseimages |