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Deep learning classification of lipid droplets in quantitative phase images

We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperf...

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Detalles Bibliográficos
Autores principales: Sheneman, Luke, Stephanopoulos, Gregory, Vasdekis, Andreas E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8021159/
https://www.ncbi.nlm.nih.gov/pubmed/33819277
http://dx.doi.org/10.1371/journal.pone.0249196
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author Sheneman, Luke
Stephanopoulos, Gregory
Vasdekis, Andreas E.
author_facet Sheneman, Luke
Stephanopoulos, Gregory
Vasdekis, Andreas E.
author_sort Sheneman, Luke
collection PubMed
description We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperform others, both quantitatively and qualitatively. We describe our imaging approach, all implemented machine learning methods, and their performance with respect to computational efficiency, required training resources, and relative method performance measured across multiple metrics. Overall, our results indicate that quantitative-phase imaging coupled to machine learning enables accurate lipid droplet classification in single living cells. As such, the present paradigm presents an excellent alternative of the more common fluorescent and Raman imaging modalities by enabling label-free, ultra-low phototoxicity, and deeper insight into the thermodynamics of metabolism of single cells.
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spelling pubmed-80211592021-04-14 Deep learning classification of lipid droplets in quantitative phase images Sheneman, Luke Stephanopoulos, Gregory Vasdekis, Andreas E. PLoS One Research Article We report the application of supervised machine learning to the automated classification of lipid droplets in label-free, quantitative-phase images. By comparing various machine learning methods commonly used in biomedical imaging and remote sensing, we found convolutional neural networks to outperform others, both quantitatively and qualitatively. We describe our imaging approach, all implemented machine learning methods, and their performance with respect to computational efficiency, required training resources, and relative method performance measured across multiple metrics. Overall, our results indicate that quantitative-phase imaging coupled to machine learning enables accurate lipid droplet classification in single living cells. As such, the present paradigm presents an excellent alternative of the more common fluorescent and Raman imaging modalities by enabling label-free, ultra-low phototoxicity, and deeper insight into the thermodynamics of metabolism of single cells. Public Library of Science 2021-04-05 /pmc/articles/PMC8021159/ /pubmed/33819277 http://dx.doi.org/10.1371/journal.pone.0249196 Text en © 2021 Luke et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Sheneman, Luke
Stephanopoulos, Gregory
Vasdekis, Andreas E.
Deep learning classification of lipid droplets in quantitative phase images
title Deep learning classification of lipid droplets in quantitative phase images
title_full Deep learning classification of lipid droplets in quantitative phase images
title_fullStr Deep learning classification of lipid droplets in quantitative phase images
title_full_unstemmed Deep learning classification of lipid droplets in quantitative phase images
title_short Deep learning classification of lipid droplets in quantitative phase images
title_sort deep learning classification of lipid droplets in quantitative phase images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8021159/
https://www.ncbi.nlm.nih.gov/pubmed/33819277
http://dx.doi.org/10.1371/journal.pone.0249196
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