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Siland a R package for estimating the spatial influence of landscape
The spatial distributions of populations are both influenced by local variables and by characteristics of surrounding landscapes. Understanding how landscape features spatially structure the frequency of a trait in a population, the abundance of a species or the species’ richness remains difficult s...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8021544/ https://www.ncbi.nlm.nih.gov/pubmed/33820933 http://dx.doi.org/10.1038/s41598-021-86900-0 |
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author | Carpentier, Florence Martin, Olivier |
author_facet | Carpentier, Florence Martin, Olivier |
author_sort | Carpentier, Florence |
collection | PubMed |
description | The spatial distributions of populations are both influenced by local variables and by characteristics of surrounding landscapes. Understanding how landscape features spatially structure the frequency of a trait in a population, the abundance of a species or the species’ richness remains difficult specially because the spatial scale effects of the landscape variables are unknown. Various methods have been proposed but their results are not easily comparable. Here, we introduce “siland”, a general method for analyzing the effect of landscape features. Based on a sequential procedure of maximum likelihood estimation, it simultaneously estimates the spatial scales and intensities of landscape variable effects. It does not require any information about the scale of effect. It integrates two landscape effects models: one is based on focal sample site (Bsiland, b for buffer) and one is distance weighted using Spatial Influence Function (Fsiland, f for function). We implemented “siland” in the adaptable and user-friendly R eponym package. It performs landscape analysis on georeferenced point observations (described in a Geographic Information System shapefile format) and allows for effects tests, effects maps and models comparison. We illustrated its use on a real dataset by the study of a crop pest (codling moth densities). |
format | Online Article Text |
id | pubmed-8021544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-80215442021-04-07 Siland a R package for estimating the spatial influence of landscape Carpentier, Florence Martin, Olivier Sci Rep Article The spatial distributions of populations are both influenced by local variables and by characteristics of surrounding landscapes. Understanding how landscape features spatially structure the frequency of a trait in a population, the abundance of a species or the species’ richness remains difficult specially because the spatial scale effects of the landscape variables are unknown. Various methods have been proposed but their results are not easily comparable. Here, we introduce “siland”, a general method for analyzing the effect of landscape features. Based on a sequential procedure of maximum likelihood estimation, it simultaneously estimates the spatial scales and intensities of landscape variable effects. It does not require any information about the scale of effect. It integrates two landscape effects models: one is based on focal sample site (Bsiland, b for buffer) and one is distance weighted using Spatial Influence Function (Fsiland, f for function). We implemented “siland” in the adaptable and user-friendly R eponym package. It performs landscape analysis on georeferenced point observations (described in a Geographic Information System shapefile format) and allows for effects tests, effects maps and models comparison. We illustrated its use on a real dataset by the study of a crop pest (codling moth densities). Nature Publishing Group UK 2021-04-05 /pmc/articles/PMC8021544/ /pubmed/33820933 http://dx.doi.org/10.1038/s41598-021-86900-0 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Carpentier, Florence Martin, Olivier Siland a R package for estimating the spatial influence of landscape |
title | Siland a R package for estimating the spatial influence of landscape |
title_full | Siland a R package for estimating the spatial influence of landscape |
title_fullStr | Siland a R package for estimating the spatial influence of landscape |
title_full_unstemmed | Siland a R package for estimating the spatial influence of landscape |
title_short | Siland a R package for estimating the spatial influence of landscape |
title_sort | siland a r package for estimating the spatial influence of landscape |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8021544/ https://www.ncbi.nlm.nih.gov/pubmed/33820933 http://dx.doi.org/10.1038/s41598-021-86900-0 |
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