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Curvature Constrained Splines for DFTB Repulsive Potential Parametrization
[Image: see text] The Curvature Constrained Splines (CCS) methodology has been used for fitting repulsive potentials to be used in SCC-DFTB calculations. The benefit of using CCS is that the actual fitting of the repulsive potential is performed through quadratic programming on a convex objective fu...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8023658/ https://www.ncbi.nlm.nih.gov/pubmed/33606527 http://dx.doi.org/10.1021/acs.jctc.0c01156 |
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author | Ammothum Kandy, Akshay Krishna Wadbro, Eddie Aradi, Bálint Broqvist, Peter Kullgren, Jolla |
author_facet | Ammothum Kandy, Akshay Krishna Wadbro, Eddie Aradi, Bálint Broqvist, Peter Kullgren, Jolla |
author_sort | Ammothum Kandy, Akshay Krishna |
collection | PubMed |
description | [Image: see text] The Curvature Constrained Splines (CCS) methodology has been used for fitting repulsive potentials to be used in SCC-DFTB calculations. The benefit of using CCS is that the actual fitting of the repulsive potential is performed through quadratic programming on a convex objective function. This guarantees a unique (for strictly convex) and optimum two-body repulsive potential in a single shot, thereby making the parametrization process robust, and with minimal human effort. Furthermore, the constraints in CCS give the user control to tune the shape of the repulsive potential based on prior knowledge about the system in question. Herein, we developed the method further with new constraints and the capability to handle sparse data. We used the method to generate accurate repulsive potentials for bulk Si polymorphs and demonstrate that for a given Slater-Koster table, which reproduces the experimental band structure for bulk Si in its ground state, we are unable to find one single two-body repulsive potential that can accurately describe the various bulk polymorphs of silicon in our training set. We further demonstrate that to increase transferability, the repulsive potential needs to be adjusted to account for changes in the chemical environment, here expressed in the form of a coordination number. By training a near-sighted Atomistic Neural Network potential, which includes many-body effects but still essentially within the first-neighbor shell, we can obtain full transferability for SCC-DFTB in terms of describing the energetics of different Si polymorphs. |
format | Online Article Text |
id | pubmed-8023658 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-80236582021-04-07 Curvature Constrained Splines for DFTB Repulsive Potential Parametrization Ammothum Kandy, Akshay Krishna Wadbro, Eddie Aradi, Bálint Broqvist, Peter Kullgren, Jolla J Chem Theory Comput [Image: see text] The Curvature Constrained Splines (CCS) methodology has been used for fitting repulsive potentials to be used in SCC-DFTB calculations. The benefit of using CCS is that the actual fitting of the repulsive potential is performed through quadratic programming on a convex objective function. This guarantees a unique (for strictly convex) and optimum two-body repulsive potential in a single shot, thereby making the parametrization process robust, and with minimal human effort. Furthermore, the constraints in CCS give the user control to tune the shape of the repulsive potential based on prior knowledge about the system in question. Herein, we developed the method further with new constraints and the capability to handle sparse data. We used the method to generate accurate repulsive potentials for bulk Si polymorphs and demonstrate that for a given Slater-Koster table, which reproduces the experimental band structure for bulk Si in its ground state, we are unable to find one single two-body repulsive potential that can accurately describe the various bulk polymorphs of silicon in our training set. We further demonstrate that to increase transferability, the repulsive potential needs to be adjusted to account for changes in the chemical environment, here expressed in the form of a coordination number. By training a near-sighted Atomistic Neural Network potential, which includes many-body effects but still essentially within the first-neighbor shell, we can obtain full transferability for SCC-DFTB in terms of describing the energetics of different Si polymorphs. American Chemical Society 2021-02-19 2021-03-09 /pmc/articles/PMC8023658/ /pubmed/33606527 http://dx.doi.org/10.1021/acs.jctc.0c01156 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Ammothum Kandy, Akshay Krishna Wadbro, Eddie Aradi, Bálint Broqvist, Peter Kullgren, Jolla Curvature Constrained Splines for DFTB Repulsive Potential Parametrization |
title | Curvature Constrained Splines for DFTB Repulsive Potential
Parametrization |
title_full | Curvature Constrained Splines for DFTB Repulsive Potential
Parametrization |
title_fullStr | Curvature Constrained Splines for DFTB Repulsive Potential
Parametrization |
title_full_unstemmed | Curvature Constrained Splines for DFTB Repulsive Potential
Parametrization |
title_short | Curvature Constrained Splines for DFTB Repulsive Potential
Parametrization |
title_sort | curvature constrained splines for dftb repulsive potential
parametrization |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8023658/ https://www.ncbi.nlm.nih.gov/pubmed/33606527 http://dx.doi.org/10.1021/acs.jctc.0c01156 |
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