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XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions
[Image: see text] The performance of several standard and popular approaches for calculating X-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges of 40 primarily organic molecules up to the size of guanine has been evaluated, focusing on the low-energy and intense 1s → π* transitions...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8023667/ https://www.ncbi.nlm.nih.gov/pubmed/33544612 http://dx.doi.org/10.1021/acs.jctc.0c01082 |
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author | Fransson, Thomas Brumboiu, Iulia E. Vidal, Marta L. Norman, Patrick Coriani, Sonia Dreuw, Andreas |
author_facet | Fransson, Thomas Brumboiu, Iulia E. Vidal, Marta L. Norman, Patrick Coriani, Sonia Dreuw, Andreas |
author_sort | Fransson, Thomas |
collection | PubMed |
description | [Image: see text] The performance of several standard and popular approaches for calculating X-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges of 40 primarily organic molecules up to the size of guanine has been evaluated, focusing on the low-energy and intense 1s → π* transitions. Using results obtained with CVS-ADC(2)-x and fc-CVS-EOM-CCSD as benchmark references, we investigate the performance of CC2, ADC(2), ADC(3/2), and commonly adopted density functional theory (DFT)-based approaches. Here, focus is on precision rather than on accuracy of transition energies and intensities—in other words, we target relative energies and intensities and the spread thereof, rather than absolute values. The use of exchange–correlation functionals tailored for time-dependent DFT calculations of core excitations leads to error spreads similar to those seen for more standard functionals, despite yielding superior absolute energies. Long-range corrected functionals are shown to perform particularly well compared to our reference data, showing error spreads in energy and intensity of 0.2–0.3 eV and ∼10%, respectively, as compared to 0.3–0.6 eV and ∼20% for a typical pure hybrid. In comparing intensities, state mixing can complicate matters, and techniques to avoid this issue are discussed. Furthermore, the influence of basis sets in high-level ab initio calculations is investigated, showing that reasonably accurate results are obtained with the use of 6-311++G**. We name this benchmark suite as XABOOM (X-ray absorption benchmark of organic molecules) and provide molecular structures and ground-state self-consistent field energies and spectroscopic data. We believe that it provides a good assessment of electronic structure theory methods for calculating X-ray absorption spectra and will become useful for future developments in this field. |
format | Online Article Text |
id | pubmed-8023667 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-80236672021-04-07 XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions Fransson, Thomas Brumboiu, Iulia E. Vidal, Marta L. Norman, Patrick Coriani, Sonia Dreuw, Andreas J Chem Theory Comput [Image: see text] The performance of several standard and popular approaches for calculating X-ray absorption spectra at the carbon, nitrogen, and oxygen K-edges of 40 primarily organic molecules up to the size of guanine has been evaluated, focusing on the low-energy and intense 1s → π* transitions. Using results obtained with CVS-ADC(2)-x and fc-CVS-EOM-CCSD as benchmark references, we investigate the performance of CC2, ADC(2), ADC(3/2), and commonly adopted density functional theory (DFT)-based approaches. Here, focus is on precision rather than on accuracy of transition energies and intensities—in other words, we target relative energies and intensities and the spread thereof, rather than absolute values. The use of exchange–correlation functionals tailored for time-dependent DFT calculations of core excitations leads to error spreads similar to those seen for more standard functionals, despite yielding superior absolute energies. Long-range corrected functionals are shown to perform particularly well compared to our reference data, showing error spreads in energy and intensity of 0.2–0.3 eV and ∼10%, respectively, as compared to 0.3–0.6 eV and ∼20% for a typical pure hybrid. In comparing intensities, state mixing can complicate matters, and techniques to avoid this issue are discussed. Furthermore, the influence of basis sets in high-level ab initio calculations is investigated, showing that reasonably accurate results are obtained with the use of 6-311++G**. We name this benchmark suite as XABOOM (X-ray absorption benchmark of organic molecules) and provide molecular structures and ground-state self-consistent field energies and spectroscopic data. We believe that it provides a good assessment of electronic structure theory methods for calculating X-ray absorption spectra and will become useful for future developments in this field. American Chemical Society 2021-02-05 2021-03-09 /pmc/articles/PMC8023667/ /pubmed/33544612 http://dx.doi.org/10.1021/acs.jctc.0c01082 Text en © 2021 The Authors. Published by American Chemical Society Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Fransson, Thomas Brumboiu, Iulia E. Vidal, Marta L. Norman, Patrick Coriani, Sonia Dreuw, Andreas XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions |
title | XABOOM: An X-ray Absorption Benchmark of Organic
Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π*
Transitions |
title_full | XABOOM: An X-ray Absorption Benchmark of Organic
Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π*
Transitions |
title_fullStr | XABOOM: An X-ray Absorption Benchmark of Organic
Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π*
Transitions |
title_full_unstemmed | XABOOM: An X-ray Absorption Benchmark of Organic
Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π*
Transitions |
title_short | XABOOM: An X-ray Absorption Benchmark of Organic
Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π*
Transitions |
title_sort | xaboom: an x-ray absorption benchmark of organic
molecules based on carbon, nitrogen, and oxygen 1s → π*
transitions |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8023667/ https://www.ncbi.nlm.nih.gov/pubmed/33544612 http://dx.doi.org/10.1021/acs.jctc.0c01082 |
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