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Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective

INTRODUCTION: Fully convoluted neural networks (FCNN) applied to video-analysis are of particular interest in the field of head and neck oncology, given that endoscopic examination is a crucial step in diagnosis, staging, and follow-up of patients affected by upper aero-digestive tract cancers. The...

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Autores principales: Paderno, Alberto, Piazza, Cesare, Del Bon, Francesca, Lancini, Davide, Tanagli, Stefano, Deganello, Alberto, Peretti, Giorgio, De Momi, Elena, Patrini, Ilaria, Ruperti, Michela, Mattos, Leonardo S., Moccia, Sara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8024583/
https://www.ncbi.nlm.nih.gov/pubmed/33842330
http://dx.doi.org/10.3389/fonc.2021.626602
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author Paderno, Alberto
Piazza, Cesare
Del Bon, Francesca
Lancini, Davide
Tanagli, Stefano
Deganello, Alberto
Peretti, Giorgio
De Momi, Elena
Patrini, Ilaria
Ruperti, Michela
Mattos, Leonardo S.
Moccia, Sara
author_facet Paderno, Alberto
Piazza, Cesare
Del Bon, Francesca
Lancini, Davide
Tanagli, Stefano
Deganello, Alberto
Peretti, Giorgio
De Momi, Elena
Patrini, Ilaria
Ruperti, Michela
Mattos, Leonardo S.
Moccia, Sara
author_sort Paderno, Alberto
collection PubMed
description INTRODUCTION: Fully convoluted neural networks (FCNN) applied to video-analysis are of particular interest in the field of head and neck oncology, given that endoscopic examination is a crucial step in diagnosis, staging, and follow-up of patients affected by upper aero-digestive tract cancers. The aim of this study was to test FCNN-based methods for semantic segmentation of squamous cell carcinoma (SCC) of the oral cavity (OC) and oropharynx (OP). MATERIALS AND METHODS: Two datasets were retrieved from the institutional registry of a tertiary academic hospital analyzing 34 and 45 NBI endoscopic videos of OC and OP lesions, respectively. The dataset referring to the OC was composed of 110 frames, while 116 frames composed the OP dataset. Three FCNNs (U-Net, U-Net 3, and ResNet) were investigated to segment the neoplastic images. FCNNs performance was evaluated for each tested network and compared to the gold standard, represented by the manual annotation performed by expert clinicians. RESULTS: For FCNN-based segmentation of the OC dataset, the best results in terms of Dice Similarity Coefficient (Dsc) were achieved by ResNet with 5(×2) blocks and 16 filters, with a median value of 0.6559. In FCNN-based segmentation for the OP dataset, the best results in terms of Dsc were achieved by ResNet with 4(×2) blocks and 16 filters, with a median value of 0.7603. All tested FCNNs presented very high values of variance, leading to very low values of minima for all metrics evaluated. CONCLUSIONS: FCNNs have promising potential in the analysis and segmentation of OC and OP video-endoscopic images. All tested FCNN architectures demonstrated satisfying outcomes in terms of diagnostic accuracy. The inference time of the processing networks were particularly short, ranging between 14 and 115 ms, thus showing the possibility for real-time application.
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spelling pubmed-80245832021-04-08 Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective Paderno, Alberto Piazza, Cesare Del Bon, Francesca Lancini, Davide Tanagli, Stefano Deganello, Alberto Peretti, Giorgio De Momi, Elena Patrini, Ilaria Ruperti, Michela Mattos, Leonardo S. Moccia, Sara Front Oncol Oncology INTRODUCTION: Fully convoluted neural networks (FCNN) applied to video-analysis are of particular interest in the field of head and neck oncology, given that endoscopic examination is a crucial step in diagnosis, staging, and follow-up of patients affected by upper aero-digestive tract cancers. The aim of this study was to test FCNN-based methods for semantic segmentation of squamous cell carcinoma (SCC) of the oral cavity (OC) and oropharynx (OP). MATERIALS AND METHODS: Two datasets were retrieved from the institutional registry of a tertiary academic hospital analyzing 34 and 45 NBI endoscopic videos of OC and OP lesions, respectively. The dataset referring to the OC was composed of 110 frames, while 116 frames composed the OP dataset. Three FCNNs (U-Net, U-Net 3, and ResNet) were investigated to segment the neoplastic images. FCNNs performance was evaluated for each tested network and compared to the gold standard, represented by the manual annotation performed by expert clinicians. RESULTS: For FCNN-based segmentation of the OC dataset, the best results in terms of Dice Similarity Coefficient (Dsc) were achieved by ResNet with 5(×2) blocks and 16 filters, with a median value of 0.6559. In FCNN-based segmentation for the OP dataset, the best results in terms of Dsc were achieved by ResNet with 4(×2) blocks and 16 filters, with a median value of 0.7603. All tested FCNNs presented very high values of variance, leading to very low values of minima for all metrics evaluated. CONCLUSIONS: FCNNs have promising potential in the analysis and segmentation of OC and OP video-endoscopic images. All tested FCNN architectures demonstrated satisfying outcomes in terms of diagnostic accuracy. The inference time of the processing networks were particularly short, ranging between 14 and 115 ms, thus showing the possibility for real-time application. Frontiers Media S.A. 2021-03-24 /pmc/articles/PMC8024583/ /pubmed/33842330 http://dx.doi.org/10.3389/fonc.2021.626602 Text en Copyright © 2021 Paderno, Piazza, Del Bon, Lancini, Tanagli, Deganello, Peretti, De Momi, Patrini, Ruperti, Mattos and Moccia http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Paderno, Alberto
Piazza, Cesare
Del Bon, Francesca
Lancini, Davide
Tanagli, Stefano
Deganello, Alberto
Peretti, Giorgio
De Momi, Elena
Patrini, Ilaria
Ruperti, Michela
Mattos, Leonardo S.
Moccia, Sara
Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective
title Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective
title_full Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective
title_fullStr Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective
title_full_unstemmed Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective
title_short Deep Learning for Automatic Segmentation of Oral and Oropharyngeal Cancer Using Narrow Band Imaging: Preliminary Experience in a Clinical Perspective
title_sort deep learning for automatic segmentation of oral and oropharyngeal cancer using narrow band imaging: preliminary experience in a clinical perspective
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8024583/
https://www.ncbi.nlm.nih.gov/pubmed/33842330
http://dx.doi.org/10.3389/fonc.2021.626602
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