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A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer
BACKGROUND: Aging is the major risk factor for most human cancers. We aim to develop and validate a reliable aging-related gene pair signature (ARGPs) to predict the prognosis of gastric cancer (GC) patients. METHODS: The mRNA expression data and clinical information were obtained from two public da...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8025368/ https://www.ncbi.nlm.nih.gov/pubmed/33823856 http://dx.doi.org/10.1186/s12938-021-00871-x |
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author | Zhang, Yankai Yan, Yichao Ning, Ning Shen, Zhanlong Ye, Yingjiang |
author_facet | Zhang, Yankai Yan, Yichao Ning, Ning Shen, Zhanlong Ye, Yingjiang |
author_sort | Zhang, Yankai |
collection | PubMed |
description | BACKGROUND: Aging is the major risk factor for most human cancers. We aim to develop and validate a reliable aging-related gene pair signature (ARGPs) to predict the prognosis of gastric cancer (GC) patients. METHODS: The mRNA expression data and clinical information were obtained from two public databases, The Cancer Genome Atlas (TCGA) dataset, and Gene Expression Omnibus (GEO) dataset, respectively. The best prognostic signature was established using Cox regression analysis (univariate and least absolute shrinkage and selection operator). The optimal cut-off value to distinguish between high- and low-risk patients was found by time-dependent receiver operating characteristic (ROC). The prognostic ability of the ARGPS was evaluated by a log‐rank test and a Cox proportional hazards regression model. RESULTS: The 24 ARGPs were constructed for GC prognosis. Using the optimal cut-off value − 0.270, all patients were stratified into high risk and low risk. In both TCGA and GEO cohorts, the results of Kaplan–Meier analysis showed that the high-risk group has a poor prognosis (P < 0.001, P = 0.002, respectively). Then, we conducted a subgroup analysis of age, gender, grade and stage, and reached the same conclusion. After adjusting for a variety of clinical and pathological factors, the results of multivariate COX regression analysis showed that the ARGPs is still an independent prognostic factor of OS (HR, 4.919; 95% CI 3.345–7.235; P < 0.001). In comparing with previous signature, the novel signature was superior, with an area under the receiver operating characteristic curve (AUC) value of 0.845 vs. 0.684 vs. 0.695. The results of immune infiltration analysis showed that the abundance of T cells follicular helper was significantly higher in the low-risk group, while the abundance of monocytes was the opposite. Finally, we identified and incorporated independent prognostic factors and developed a superior nomogram to predict the prognosis of GC patients. CONCLUSION: Our study has developed a robust prognostic signature that can accurately predict the prognostic outcome of GC patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12938-021-00871-x. |
format | Online Article Text |
id | pubmed-8025368 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-80253682021-04-07 A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer Zhang, Yankai Yan, Yichao Ning, Ning Shen, Zhanlong Ye, Yingjiang Biomed Eng Online Research BACKGROUND: Aging is the major risk factor for most human cancers. We aim to develop and validate a reliable aging-related gene pair signature (ARGPs) to predict the prognosis of gastric cancer (GC) patients. METHODS: The mRNA expression data and clinical information were obtained from two public databases, The Cancer Genome Atlas (TCGA) dataset, and Gene Expression Omnibus (GEO) dataset, respectively. The best prognostic signature was established using Cox regression analysis (univariate and least absolute shrinkage and selection operator). The optimal cut-off value to distinguish between high- and low-risk patients was found by time-dependent receiver operating characteristic (ROC). The prognostic ability of the ARGPS was evaluated by a log‐rank test and a Cox proportional hazards regression model. RESULTS: The 24 ARGPs were constructed for GC prognosis. Using the optimal cut-off value − 0.270, all patients were stratified into high risk and low risk. In both TCGA and GEO cohorts, the results of Kaplan–Meier analysis showed that the high-risk group has a poor prognosis (P < 0.001, P = 0.002, respectively). Then, we conducted a subgroup analysis of age, gender, grade and stage, and reached the same conclusion. After adjusting for a variety of clinical and pathological factors, the results of multivariate COX regression analysis showed that the ARGPs is still an independent prognostic factor of OS (HR, 4.919; 95% CI 3.345–7.235; P < 0.001). In comparing with previous signature, the novel signature was superior, with an area under the receiver operating characteristic curve (AUC) value of 0.845 vs. 0.684 vs. 0.695. The results of immune infiltration analysis showed that the abundance of T cells follicular helper was significantly higher in the low-risk group, while the abundance of monocytes was the opposite. Finally, we identified and incorporated independent prognostic factors and developed a superior nomogram to predict the prognosis of GC patients. CONCLUSION: Our study has developed a robust prognostic signature that can accurately predict the prognostic outcome of GC patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12938-021-00871-x. BioMed Central 2021-04-06 /pmc/articles/PMC8025368/ /pubmed/33823856 http://dx.doi.org/10.1186/s12938-021-00871-x Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Zhang, Yankai Yan, Yichao Ning, Ning Shen, Zhanlong Ye, Yingjiang A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
title | A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
title_full | A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
title_fullStr | A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
title_full_unstemmed | A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
title_short | A signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
title_sort | signature of 24 aging‑related gene pairs predict overall survival in gastric cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8025368/ https://www.ncbi.nlm.nih.gov/pubmed/33823856 http://dx.doi.org/10.1186/s12938-021-00871-x |
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