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Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations

BACKGROUND: Transposable elements are significant components of most organism’s genomes, yet the reasons why their abundances vary significantly among species is poorly understood. A recent study has suggested that even in the absence of traditional molecular evolutionary explanations, transposon pr...

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Detalles Bibliográficos
Autores principales: Butler, Christopher L., Bell, Ellen A., Taylor, Martin I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8025564/
https://www.ncbi.nlm.nih.gov/pubmed/33827443
http://dx.doi.org/10.1186/s12864-021-07569-3
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author Butler, Christopher L.
Bell, Ellen A.
Taylor, Martin I.
author_facet Butler, Christopher L.
Bell, Ellen A.
Taylor, Martin I.
author_sort Butler, Christopher L.
collection PubMed
description BACKGROUND: Transposable elements are significant components of most organism’s genomes, yet the reasons why their abundances vary significantly among species is poorly understood. A recent study has suggested that even in the absence of traditional molecular evolutionary explanations, transposon proliferation may occur through a process known as ‘transposon engineering’. However, their model used a fixed beneficial transposon insertion frequency of 20%, which we believe to be unrealistically high. RESULTS: Reducing this beneficial insertion frequency, while keeping all other parameters identical, prevented transposon proliferation. CONCLUSIONS: We conclude that the author’s original findings are better explained through the action of positive selection rather than ‘transposon engineering’, with beneficial insertion effects remaining important during transposon proliferation events.
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spelling pubmed-80255642021-04-08 Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations Butler, Christopher L. Bell, Ellen A. Taylor, Martin I. BMC Genomics Correspondence BACKGROUND: Transposable elements are significant components of most organism’s genomes, yet the reasons why their abundances vary significantly among species is poorly understood. A recent study has suggested that even in the absence of traditional molecular evolutionary explanations, transposon proliferation may occur through a process known as ‘transposon engineering’. However, their model used a fixed beneficial transposon insertion frequency of 20%, which we believe to be unrealistically high. RESULTS: Reducing this beneficial insertion frequency, while keeping all other parameters identical, prevented transposon proliferation. CONCLUSIONS: We conclude that the author’s original findings are better explained through the action of positive selection rather than ‘transposon engineering’, with beneficial insertion effects remaining important during transposon proliferation events. BioMed Central 2021-04-07 /pmc/articles/PMC8025564/ /pubmed/33827443 http://dx.doi.org/10.1186/s12864-021-07569-3 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Correspondence
Butler, Christopher L.
Bell, Ellen A.
Taylor, Martin I.
Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
title Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
title_full Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
title_fullStr Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
title_full_unstemmed Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
title_short Removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
title_sort removal of beneficial insertion effects prevent the long-term persistence of transposable elements within simulated asexual populations
topic Correspondence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8025564/
https://www.ncbi.nlm.nih.gov/pubmed/33827443
http://dx.doi.org/10.1186/s12864-021-07569-3
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